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Report for CCDS43213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43213.1 Public Homo sapiens 4 DEFB131A 24 110 108 CCDS HistoryNCBI Gene:644414Re-query CCDS DB by CCDS ID:43213.1Re-query CCDS DB by GeneID:644414See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43213.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334879.2 ENSP00000335538.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334879.2Link to Ensembl Protein Viewer:ENSP00000335538.1Re-query CCDS DB by Nucleotide ID:ENST00000334879Re-query CCDS DB by Protein ID:ENSP00000335538
Original member Current member NCBI NM_001040448.3 NP_001035538.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040448.3Link to Protein Sequence:NP_001035538.2Re-query CCDS DB by Nucleotide ID:NM_001040448Re-query CCDS DB by Protein ID:NP_001035538Link to BLAST:NP_001035538.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035538.2 70 P59861 70 100% 0 0

Chromosomal Locations for CCDS 43213.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 9444534 9444591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9450360 9450514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (213 nt):
ATGAGGGTCTTGTTTTTTGTCTTTGGAGTCCTTTCCTTGATGTTCACAGTTCCTCCAGCCAGAAGCTTCA
TTTCTAATGATGAATGTCCTTCAGAATATTATCATTGCAGACTGAAGTGCAATGCTGATGAACATGCAAT
TAGATACTGTGCTGACTTCAGCATCTGCTGCAAACTGAAGATCATTGAAATTGACGGACAAAAGAAGTGG
TGA

Translation (70 aa):
MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLKIIEIDGQKKW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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