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Report for CCDS42920.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42920.2 Public Homo sapiens 21 OLIG1 24 110 108 CCDS HistoryNCBI Gene:116448Re-query CCDS DB by CCDS ID:42920.2Re-query CCDS DB by GeneID:116448See the combined annotation on chromosome 21 in Sequence Viewer

Public Note for CCDS 42920.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42920.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382348.2 ENSP00000371785.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382348.2Link to Ensembl Protein Viewer:ENSP00000371785.1Re-query CCDS DB by Nucleotide ID:ENST00000382348Re-query CCDS DB by Protein ID:ENSP00000371785
Original member Current member NCBI NM_138983.3 NP_620450.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138983.3Link to Protein Sequence:NP_620450.2Re-query CCDS DB by Nucleotide ID:NM_138983Re-query CCDS DB by Protein ID:NP_620450Link to BLAST:NP_620450.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620450.2 271 Q8TAK6 271 100% 0 0

Chromosomal Locations for CCDS 42920.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 33070247 33071062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGTACTATGCGGTTTCCCAGGCGCGCGTGAACGCGGTCCCCGGGACCATGCTGCGGCCACAGCGGCCCG
GAGACTTGCAGCTCGGGGCCTCCCTCTACGAGCTGGTGGGCTACAGGCAGCCGCCCTCCTCCTCCTCCTC
CTCCACCTCCTCCACCTCCTCCACTTCCTCCTCCTCCACGACGGCCCCCCTCCTCCCCAAGGCTGCGCGC
GAGAAGCCGGAGGCGCCGGCCGAGCCTCCAGGCCCCGGGCCCGGGTCAGGCGCGCACCCGGGCGGCAGCG
CCCGGCCGGACGCCAAGGAGGAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCG
CATGCAGGACCTGAACCTGGCCATGGACGCCCTGCGCGAGGTCATCCTGCCCTACTCAGCGGCGCACTGC
CAGGGCGCGCCCGGCCGCAAGCTCTCCAAGATAGCCACGCTGCTGCTCGCCCGCAACTACATCCTACTGC
TGGGCAGCTCGCTGCAGGAGCTGCGCCGCGCGCTGGGCGAGGGCGCCGGGCCCGCCGCGCCGCGCCTGCT
GCTGGCCGGGCTGCCCCTGCTCGCCGCCGCGCCCGGCTCCGTGCTGCTGGCGCCCGGCGCCGTAGGACCC
CCCGACGCGCTGCGCCCCGCCAAGTACCTGTCGCTGGCGCTGGACGAGCCGCCGTGCGGCCAGTTCGCTC
TCCCCGGCGGCGGCGCAGGCGGCCCCGGCCTCTGCACCTGCGCCGTGTGCAAGTTCCCGCACCTGGTCCC
GGCCAGCCTGGGCCTGGCCGCCGTGCAGGCGCAATTCTCCAAGTGA

Translation (271 aa):
MYYAVSQARVNAVPGTMLRPQRPGDLQLGASLYELVGYRQPPSSSSSSTSSTSSTSSSSTTAPLLPKAAR
EKPEAPAEPPGPGPGSGAHPGGSARPDAKEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHC
QGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGAGPAAPRLLLAGLPLLAAAPGSVLLAPGAVGP
PDALRPAKYLSLALDEPPCGQFALPGGGAGGPGLCTCAVCKFPHLVPASLGLAAVQAQFSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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