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Report for CCDS42864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42864.1 Public Homo sapiens 20 COMMD7 24 110 108 CCDS HistoryNCBI Gene:149951Re-query CCDS DB by CCDS ID:42864.1Re-query CCDS DB by GeneID:149951See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42864.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278980.11 ENSP00000278980.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278980.11Link to Ensembl Protein Viewer:ENSP00000278980.6Re-query CCDS DB by Nucleotide ID:ENST00000278980Re-query CCDS DB by Protein ID:ENSP00000278980
Original member Current member NCBI NM_053041.3 NP_444269.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_053041.3Link to Protein Sequence:NP_444269.2Re-query CCDS DB by Nucleotide ID:NM_053041Re-query CCDS DB by Protein ID:NP_444269Link to BLAST:NP_444269.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444269.2 200 Q86VX2-1 200 100% 0 0

Chromosomal Locations for CCDS 42864.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 32703382 32703458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32704023 32704071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32704440 32704489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32704814 32704904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32706583 32706620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32706704 32706760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32727893 32727995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32728089 32728142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32743308 32743391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGGCCGCCTGCACTGCACTGAGGACCCGGTGCCGGAGGCCGTGGGCGGCGACATGCAGCAGCTGAACC
AGCTGGGCGCGCAGCAGTTCTCAGCCCTGACAGAGGTGCTTTTCCACTTCCTAACTGAGCCAAAAGAGGT
GGAAAGATTTCTGGCTCAGCTCTCTGAATTTGCCACCACCAATCAGATCAGTCTTGGCTCCCTCAGAAGC
ATCGTGAAAAGCCTCCTTCTGGTTCCAAATGGTGCTTTGAAGAAGAGTCTCACAGCCAAGCAGGTCCAGG
CGGATTTCATAACTCTGGGTCTTAGTGAGGAGAAAGCCACTTACTTTTCTGAAAAGTGGAAGCAGAATGC
TCCCACCCTTGCTCGATGGGCCATAGGTCAGACTCTGATGATTAACCAGCTCATAGATATGGAGTGGAAA
TTTGGAGTGACATCTGGGAGCAGCGAATTGGAGAAAGTGGGAAGTATATTTTTACAACTAAAGTTGGTGG
TTAAGAAAGGAAATCAAACCGAAAATGTGTATATAGAATTAACCTTGCCTCAGTTCTACAGCTTCCTGCA
CGAGATGGAGCGAGTCAGAACCAGCATGGAGTGTTTCTGCTGA

Translation (200 aa):
MGRLHCTEDPVPEAVGGDMQQLNQLGAQQFSALTEVLFHFLTEPKEVERFLAQLSEFATTNQISLGSLRS
IVKSLLLVPNGALKKSLTAKQVQADFITLGLSEEKATYFSEKWKQNAPTLARWAIGQTLMINQLIDMEWK
FGVTSGSSELEKVGSIFLQLKLVVKKGNQTENVYIELTLPQFYSFLHEMERVRTSMECFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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