NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42688.1 Public Homo sapiens 2 WDPCP 24 110 108 CCDS HistoryNCBI Gene:51057Re-query CCDS DB by CCDS ID:42688.1Re-query CCDS DB by GeneID:51057See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272321.12 ENSP00000272321.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272321.12Link to Ensembl Protein Viewer:ENSP00000272321.7Re-query CCDS DB by Nucleotide ID:ENST00000272321Re-query CCDS DB by Protein ID:ENSP00000272321
Original member Current member NCBI NM_015910.7 NP_056994.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015910.7Link to Protein Sequence:NP_056994.3Re-query CCDS DB by Nucleotide ID:NM_015910Re-query CCDS DB by Protein ID:NP_056994Link to BLAST:NP_056994.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056994.3 746 O95876-1 746 100% 0 0

Chromosomal Locations for CCDS 42688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 63122006 63122056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63152914 63152945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63153495 63153574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63174670 63174832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63259307 63259409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63313248 63313311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63378386 63378509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63381906 63382094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63404048 63404657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63433745 63433936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63437421 63437554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63439757 63439871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63484604 63484663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63484917 63484987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63486542 63486586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63487447 63487494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63492856 63492940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 63588197 63588271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGAGGCGAGAGTTTTGCTGGGACGCCTACTCCAAAGCGGCCGGGAGTCGCGCTTCTTCCCCACTCCCGA
GACAGGATAGAGATTCCTTCTGCCATCAGATGTCTTTCTGCTTGACTGAACTGCACCTGTGGTCTTTGAA
GAATACCTTACACATTGCGGATAGAGACATTGGGATCTACCAGTATTATGACAAGAAAGATCCACCAGCG
ACAGAGCATGGTAACTTAGAAAAGAAGCAGAAGCTGGCAGAGTCACGAGATTATCCTTGGACGCTCAAAA
ACAGACGCCCAGAAAAACTCCGAGACTCGCTCAAAGAGTTGGAGGAGCTGATGCAAAACAGTCGGTGTGT
GCTGAGCAAATGGAAGAACAAATATGTCTGTCAGCTCCTTTTTGGTTCAGGTGTGCTGGTGTCTCTAAGC
CTTTCTGGGCCGCAGCTGGAGAAAGTGGTGATTGACAGAAGCCTGGTGGGGAAGCTCATCTCAGACACCA
TCAGTGATGCTCTTCTCACAGACAGTTTTATCATCTTATCATTTTTGGCACAAAACAAACTATGTTTTAT
TCAGTTTACCAAGAAGATGGAGTCTTCTGATGTAAACAAAAGACTGGAAAAACTCTCAGCCTTGGATTAT
AAGATTTTCTATTATGAAATACCCGGCCCAATAAACAAGACAACAGAGCGACATCTAGCTATCAACTGTG
TTCATGATAGAGTTGTTTGCTGGTGGCCACTGGTCAACGATGATGCTTGGCCTTGGGCCCCCATTTCTTC
TGAGAAGGACAGAGCCAATCTACTCCTCCTGGGTTATGCTCAAGGAAGACTAGAGGTTCTGAGTTCTGTC
CGCACAGAATGGGACCCACTGGATGTTCGCTTTGGCACCAAACAGCCTTATCAGGTGTTCACAGTGGAGC
ACTCCGTAAGTGTAGACAAAGAGCCCATGGCTGACAGCTGCATCTATGAATGCATTCGGAATAAAATCCA
GTGTGTGTCAGTCACCAGAATACCACTAAAGTCAAAGGCCATCAGCTGCTGCAGGAATGTTACTGAAGAC
AAACTGATTCTGGGCTGTGAAGATTCTTCGCTAATTCTTTATGAAACTCACCGTAGAGTGACTCTCTTAG
CACAGACTGAACTTTTGCCTTCATTAATAAGCTGCCACCCAAGTGGTGCCATTCTGCTAGTTGGCAGCAA
CCAAGGGGAGTTGCAAATTTTTGATATGGCTCTATCCCCTATTAACATCCAACTGTTGGCTGAAGACCGC
TTACCCAGGGAGACTCTGCAATTCAGTAAATTATTTGATGCCTCCAGCAGTCTTGTTCAAATGCAATGGA
TAGCTCCTCAGGTTGTTTCTCAGAAGGGTGAAGGTAGTGATATCTATGATCTCCTCTTCCTCAGGTTTGA
AAGAGGACCTTTGGGTGTGCTGTTGTTTAAACTAGGCGTCTTCACTCGAGGACAGCTGGGCCTGATAGAC
ATCATCTTCCAGTACATTCACTGTGATGAGATCTATGAGGCAATAAACATCCTGAGCAGCATGAACTGGG
ACACTCTGGGCCACCAGTGCTTTATCAGCATGAGCGCCATTGTAAACCATCTTCTTAGACAGAAGCTCAC
TCCAGAGAGAGAAGCACAGCTTGAGACAAGCCTTGGAACCTTCTATGCTCCAACAAGACCACTTCTGGAT
TCCACTATATTGGAATATAGAGATCAAATCAGCAAATATGCAAGGAGATTCTTCCATCACTTGCTCAGGT
ACCAGAGGTTTGAAAAGGCATTTCTCCTAGCTGTTGACGTTGGTGCTCGTGACCTCTTTATGGATATTCA
TTACCTTGCACTAGATAAAGGTGAATTGGCACTAGCTGAAGTGGCAAGAAAAAGAGCTAGTGACATTGAT
GCAGAATCAATAACCTCTGGGGTTGAACTCCTGGGACCCTTGGACAGAGGGGATATGCTAAATGAAGCAT
TTATTGGCCTGTCTTTAGCACCTCAAGGAGAAGACTCATTTCCAGATAACCTCCCTCCCTCTTGCCCAAC
CCACAGACATATTTTACAACAAAGAATACTGAATGGCTCTTCTAACAGACAAATAATTGACAGAAGGAAT
GAACTTGAAAAAGACATCTGTTCTGGATTTTTGATGACTAATACCTGTAATGCAGAAGACGGAGAACTGA
GAGAAGACGGCAGAGAACAGGAAATCAGAGATGGTGGTTCTCTCAAAATGATTCACTTTGGTCTGGTGTA
A

Translation (746 aa):
MRREFCWDAYSKAAGSRASSPLPRQDRDSFCHQMSFCLTELHLWSLKNTLHIADRDIGIYQYYDKKDPPA
TEHGNLEKKQKLAESRDYPWTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYVCQLLFGSGVLVSLS
LSGPQLEKVVIDRSLVGKLISDTISDALLTDSFIILSFLAQNKLCFIQFTKKMESSDVNKRLEKLSALDY
KIFYYEIPGPINKTTERHLAINCVHDRVVCWWPLVNDDAWPWAPISSEKDRANLLLLGYAQGRLEVLSSV
RTEWDPLDVRFGTKQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTED
KLILGCEDSSLILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMALSPINIQLLAEDR
LPRETLQFSKLFDASSSLVQMQWIAPQVVSQKGEGSDIYDLLFLRFERGPLGVLLFKLGVFTRGQLGLID
IIFQYIHCDEIYEAINILSSMNWDTLGHQCFISMSAIVNHLLRQKLTPEREAQLETSLGTFYAPTRPLLD
STILEYRDQISKYARRFFHHLLRYQRFEKAFLLAVDVGARDLFMDIHYLALDKGELALAEVARKRASDID
AESITSGVELLGPLDRGDMLNEAFIGLSLAPQGEDSFPDNLPPSCPTHRHILQQRILNGSSNRQIIDRRN
ELEKDICSGFLMTNTCNAEDGELREDGREQEIRDGGSLKMIHFGLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH