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Report for CCDS42581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42581.1 Public Homo sapiens 19 STRN4 24 110 108 CCDS HistoryNCBI Gene:29888Re-query CCDS DB by CCDS ID:42581.1Re-query CCDS DB by GeneID:29888See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 42581.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391910.7 ENSP00000375777.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391910.7Link to Ensembl Protein Viewer:ENSP00000375777.1Re-query CCDS DB by Nucleotide ID:ENST00000391910Re-query CCDS DB by Protein ID:ENSP00000375777
Original member Current member NCBI NM_001039877.2 NP_001034966.1 Accepted alive Link to Nucleotide Sequence:NM_001039877.2Link to Protein Sequence:NP_001034966.1Re-query CCDS DB by Nucleotide ID:NM_001039877Re-query CCDS DB by Protein ID:NP_001034966Link to BLAST:NP_001034966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034966.1 760 Q9NRL3-3 760 100% 0 0

Chromosomal Locations for CCDS 42581.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46720602 46720771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46721986 46722072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46722242 46722340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46722810 46722950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46723114 46723284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46724807 46724928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46725332 46725379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46725473 46725648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46727452 46727567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46727894 46728007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46728618 46728777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46730732 46730873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46733039 46733236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46736823 46736901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46738164 46738237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46738785 46738888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46746149 46746430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGATGGAGGAGCGAGCGGCCGCCGCGGTCGCCGCCGCCGCCTCCTCCTGCCGTCCGCTCGGCTCAGGCG
CGGGCCCTGGCCCCACTGGGGCGGCCCCGGTCTCCGCCCCTGCCCCCGGGCCGGGCCCGGCAGGTAAGGG
AGGCGGCGGCGGAGGCAGCCCCGGGCCCACGGCGGGCCCGGAGCCCCTGAGCCTGCCGGGGATCCTGCAC
TTTATCCAGCACGAGTGGGCGCGCTTCGAAGCCGAGAAAGCCCGCTGGGAGGCCGAGCGCGCCGAGTTAC
AGGCTCAGGTGGCCTTCCTTCAGGGAGAGAGGAAAGGGCAGGAGAATCTAAAGACGGACCTGGTGCGGCG
GATCAAGATGCTAGAGTATGCGCTGAAGCAGGAAAGGGCCAAATATCATAAACTGAAGTTTGGGACAGAC
CTGAACCAGGGGGAGAAGAAAGCAGATGTGTCAGAACAAGTCTCCAATGGCCCCGTGGAATCGGTCACCC
TGGAGAACAGCCCGTTGGTGTGGAAGGAGGGGCGGCAGCTTCTCCGACAGTACCTGGAAGAGGTGGGCTA
CACAGACACCATCCTCGACATGCGGTCCAAGCGCGTCCGTTCCCTGCTGGGCCGCTCGCTGGAGCTCAAC
GGGGCAGTGGAGCCGAGTGAAGGGGCCCCCAGGGCTCCACCAGGCCCTGCAGGGCTCAGTGGTGGGGAGT
CGCTGCTGGTGAAACAGATCGAGGAGCAGATAAAGAGGAACGCGGCAGGCAAAGATGGCAAAGAGCGCTT
GGGCGGCTCAGTGCTGGGGCAGATCCCCTTCCTGCAGAACTGCGAGGACGAAGACAGCGACGAGGACGAT
GAGCTGGACAGCGTGCAGCACAAGAAGCAGCGTGTGAAGCTCCCATCCAAGGCTCTGGTGCCCGAAATGG
AAGACGAGGATGAGGAAGACGACTCTGAGGATGCTATCAATGAGTTTGATTTCCTGGGCTCAGGAGAGGA
TGGGGAAGGGGCTCCAGACCCTCGGCGGTGCACTGTGGATGGGAGCCCCCATGAGCTGGAAAGCCGTCGG
GTCAAACTCCAAGGCATTCTGGCTGACCTGCGGGATGTGGATGGGCTGCCCCCAAAAGTGACTGGCCCGC
CTCCTGGCACACCCCAGCCCCGGCCACATGAAGGTTCCTTTGGCTTCTCCTCAGACGTCTTCATCATGGA
CACTATCGGGGGCGGGGAGGTGAGCCTGGGGGACTTGGCAGATCTCACCGTCACCAACGACAACGACCTC
AGCTGCGATCTGTCTGACAGCAAAGATGCTTTTAAGAAGACGTGGAACCCCAAGTTCACCCTGCGCTCGC
ACTACGACGGCATTCGTTCCCTGGCCTTCCACCACAGCCAGTCGGCTCTGCTCACCGCCTCCGAGGACGG
CACGCTCAAGCTCTGGAACCTGCAGAAGGCGGTCACGGCCAAGAAGAATGCGGCGCTAGATGTGGAACCT
ATACATGCTTTCCGGGCTCACAGGGGCCCAGTGTTGGCTGTGGCTATGGGCAGCAACAGTGAATACTGCT
ACAGTGGCGGGGCAGATGCCTGCATCCATAGTTGGAAGATTCCAGACCTCAGCATGGATCCCTATGATGG
CTACGACCCAAGCGTGCTGAGCCACGTCCTGGAGGGCCACGGGGACGCCGTGTGGGGCCTGGCCTTCAGT
CCCACCTCCCAGCGCCTGGCCTCCTGTTCTGCTGATGGCACCGTCCGCATCTGGGACCCCAGCAGCAGCA
GCCCGGCCTGCCTCTGCACCTTCCCCACAGCCAGCGAGCACGGGGTCCCCACCTCAGTGGCCTTCACCAG
CACCGAGCCTGCCCACATCGTGGCCTCCTTCCGCTCTGGCGACACCGTCTTGTATGACATGGAGGTTGGC
AGTGCCCTCCTCACGCTGGAGTCCCGGGGCAGCAGCGGTCCAACCCAGATCAACCAAGTGGTGAGTCATC
CAAACCAGCCTCTCACCATCACCGCCCACGACGACAGGGGCATCCGCTTCCTGGACAATCGGACAGGTAA
GCCGGTGCACTCCATGGTTGCACACCTGGACGCAGTCACCTGCCTAGCCGTGGACCCCAACGGCGCATTC
CTGATGTCAGGAAGCCATGACTGCTCCCTGCGTCTCTGGAGCCTGGACAACAAAACGTGCGTGCAGGAGA
TCACGGCCCACCGCAAGAAGCACGAGGAGGCCATCCACGCTGTTGCCTGCCACCCCAGCAAGGCCCTCAT
TGCCAGTGCTGGCGCTGATGCCCTGGCCAAGGTCTTCGTATGA

Translation (760 aa):
MMEERAAAAVAAAASSCRPLGSGAGPGPTGAAPVSAPAPGPGPAGKGGGGGGSPGPTAGPEPLSLPGILH
FIQHEWARFEAEKARWEAERAELQAQVAFLQGERKGQENLKTDLVRRIKMLEYALKQERAKYHKLKFGTD
LNQGEKKADVSEQVSNGPVESVTLENSPLVWKEGRQLLRQYLEEVGYTDTILDMRSKRVRSLLGRSLELN
GAVEPSEGAPRAPPGPAGLSGGESLLVKQIEEQIKRNAAGKDGKERLGGSVLGQIPFLQNCEDEDSDEDD
ELDSVQHKKQRVKLPSKALVPEMEDEDEEDDSEDAINEFDFLGSGEDGEGAPDPRRCTVDGSPHELESRR
VKLQGILADLRDVDGLPPKVTGPPPGTPQPRPHEGSFGFSSDVFIMDTIGGGEVSLGDLADLTVTNDNDL
SCDLSDSKDAFKKTWNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEP
IHAFRAHRGPVLAVAMGSNSEYCYSGGADACIHSWKIPDLSMDPYDGYDPSVLSHVLEGHGDAVWGLAFS
PTSQRLASCSADGTVRIWDPSSSSPACLCTFPTASEHGVPTSVAFTSTEPAHIVASFRSGDTVLYDMEVG
SALLTLESRGSSGPTQINQVVSHPNQPLTITAHDDRGIRFLDNRTGKPVHSMVAHLDAVTCLAVDPNGAF
LMSGSHDCSLRLWSLDNKTCVQEITAHRKKHEEAIHAVACHPSKALIASAGADALAKVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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