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Report for CCDS42414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42414.1 Public Homo sapiens 18 TXNDC2 24 110 108 CCDS HistoryNCBI Gene:84203Re-query CCDS DB by CCDS ID:42414.1Re-query CCDS DB by GeneID:84203See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306084.6 ENSP00000304908.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306084.6Link to Ensembl Protein Viewer:ENSP00000304908.6Re-query CCDS DB by Nucleotide ID:ENST00000306084Re-query CCDS DB by Protein ID:ENSP00000304908
Original member Current member NCBI NM_001098529.2 NP_001091999.1 Accepted alive Link to Nucleotide Sequence:NM_001098529.2Link to Protein Sequence:NP_001091999.1Re-query CCDS DB by Nucleotide ID:NM_001098529Re-query CCDS DB by Protein ID:NP_001091999Link to BLAST:NP_001091999.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091999.1 553 Q86VQ3-1 553 100% 0 0

Chromosomal Locations for CCDS 42414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 9886175 9886283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9886589 9888141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGATGTAGACAAGGAACTAGGAATGGAAAGTGTTAAAGCTGGAGCCTCTGGAAAACCAGAAATGAGGC
TGGGCACTCAGGAAGAAACAAGTGAAGGTGATGCTAATGAAAGCTCATTACTAGTCCTGTCCAGCAACGT
GCCTCTCCTGGCCCTAGAGTTCTTGGAAATAGCCCAGGCCAAAGAGAAGGCCTTTCTCCCCATGGTCAGC
CACACGTTCCACATGCGCACAGAGGAGTCTGATGCCTCACAGGAGGGCGATGACCTACCCAAGTCCTCAG
CAAACACCAGCCATCCCAAGCAGGATGACAGCCCCAAGTCCTCAGAAGAAACCATCCAGCCCAAGGAGGG
TGACATCCCCAAGGCCCCAGAAGAAACCATCCAATCCAAGAAGGAGGACCTCCCCAAGTCCTCAGAAAAA
GCCATCCAGCCCAAAGAGAGTAACATCCCCAAGTCCTCAGCAAAACCCATCCAGCCCAAGCTGGGCAATA
TTCCCAAGGCCTCAGTGAAGCCCAGCCAGCCCAAGGAGGGTGACATCCCCAAGGCCCCAGAAGAAACCAT
CCAATCCAAGAAGGAGGACCTCCCCAAGTCCTCAGAAGAAGCCATCCAGCCCAAAGAGGGTGACATCCCC
AAGTCCTCAGCAAAACCCATCCAGCCCAAGCTGGGCAATATTGCCAAGACCTCAGTGAAGCCCAGCCAGC
CCAAGGAGAGTGATATCCCCAAGTCCCCAGAAGAAACCATCCAGCCCAAGGAGGGTGACATCCCCAAGTC
CTCAGCAAAGCCCATCCAGCCCAAGCTGGGCAATATTCCCAAGGCCTCAGTGAAGCCCAGCCAGCCCAAG
GAGGGTGACATCTCCAAGTCCCCAGAAGAAGCCATCCAGCCCAAGGAGGGTGACCTCCCCAAGTCCCTAG
AGGAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAAGAAGCCATCCAGCCCAAGGAGGG
TGACATCCCCAAGTCCCTAGAGGAAGCCATCCAGCCTAAGGAGGGTGACATCCCCAAGTCCCCAGAAGAA
ACCATCCAGCCCAAGAAGGGTGACATCCCCAAGTCCCCAGAAGAAGCCATCCAGCCCAAGGAGGGTGACA
TTCCCAAGTCTCCAAAACAAGCCATCCAGCCCAAGGAGGGTGACATTCCCAAGTCCCTAGAGGAAGCCAT
CCCACCCAAGGAGATTGACATCCCCAAGTCCCCAGAAGAAACCATCCAGCCCAAGGAGGATGACAGCCCC
AAGTCCCTAGAAGAAGCCACCCCATCCAAGGAGGGTGACATCCTAAAGCCTGAAGAAGAAACAATGGAGT
TCCCGGAGGGGGACAAGGTGAAAGTGATCCTGAGCAAGGAGGACTTTGAGGCATCACTGAAGGAGGCCGG
GGAGAGGCTGGTGGCTGTGGACTTCTCGGCCACGTGGTGTGGGCCCTGCAGGACCATCAGACCATTCTTC
CATGCCCTGTCTGTGAAGCATGAGGATGTGGTGTTCCTGGAGGTGGACGCTGACAACTGTGAGGAGGTGG
TGAGAGAGTGCGCCATCATGTGTGTCCCAACCTTTCAGTTTTATAAAAAAGAAGAAAAGGTGGATGAACT
TTGCGGCGCCCTTAAGGAAAAACTTGAAGCAGTCATTGCAGAATTAAAGTAA

Translation (553 aa):
MDVDKELGMESVKAGASGKPEMRLGTQEETSEGDANESSLLVLSSNVPLLALEFLEIAQAKEKAFLPMVS
HTFHMRTEESDASQEGDDLPKSSANTSHPKQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKSSEK
AIQPKESNIPKSSAKPIQPKLGNIPKASVKPSQPKEGDIPKAPEETIQSKKEDLPKSSEEAIQPKEGDIP
KSSAKPIQPKLGNIAKTSVKPSQPKESDIPKSPEETIQPKEGDIPKSSAKPIQPKLGNIPKASVKPSQPK
EGDISKSPEEAIQPKEGDLPKSLEEAIQPKEGDIPKSPEEAIQPKEGDIPKSLEEAIQPKEGDIPKSPEE
TIQPKKGDIPKSPEEAIQPKEGDIPKSPKQAIQPKEGDIPKSLEEAIPPKEIDIPKSPEETIQPKEDDSP
KSLEEATPSKEGDILKPEEETMEFPEGDKVKVILSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFF
HALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAELK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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