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Report for CCDS4239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4239.1 Public Homo sapiens 5 ZMAT2 24 110 108 CCDS HistoryNCBI Gene:153527Re-query CCDS DB by CCDS ID:4239.1Re-query CCDS DB by GeneID:153527See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4239.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274712.8 ENSP00000274712.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274712.8Link to Ensembl Protein Viewer:ENSP00000274712.2Re-query CCDS DB by Nucleotide ID:ENST00000274712Re-query CCDS DB by Protein ID:ENSP00000274712
Original member Current member NCBI NM_144723.3 NP_653324.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144723.3Link to Protein Sequence:NP_653324.1Re-query CCDS DB by Nucleotide ID:NM_144723Re-query CCDS DB by Protein ID:NP_653324Link to BLAST:NP_653324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653324.1 199 Q96NC0 199 100% 0 0

Chromosomal Locations for CCDS 4239.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140700461 140700478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140700819 140700912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140702006 140702129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140703918 140703991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140704426 140704571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140705613 140705756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCGTCGGGCAGCGGGACAAAAAACTTGGACTTTCGCCGAAAGTGGGACAAAGATGAATATGAGAAAC
TCGCCGAGAAGAGGCTCACGGAAGAGAGAGAAAAGAAAGATGGAAAACCAGTGCAGCCTGTCAAGCGAGA
GCTTTTACGGCATAGGGACTACAAGGTGGACTTGGAATCCAAGCTTGGGAAGACAATTGTCATTACCAAG
ACAACCCCTCAATCTGAGATGGGAGGATATTACTGCAATGTCTGTGACTGTGTGGTGAAGGACTCCATCA
ACTTTCTGGATCACATTAATGGAAAGAAACATCAGAGAAACCTGGGCATGTCTATGCGTGTGGAACGTTC
CACCCTGGATCAGGTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGAGAAGCAGAAGGATTAT
GATTTTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGAGGAAAAGGCCAAAGCGTACAAGAAAGAGAAAC
AGAAGGAGAAGAAAAGGAGGGCTGAGGAGGACTTGACATTTGAGGAGGACGATGAGATGGCAGCTGTGAT
GGGCTTCTCTGGCTTTGGTTCCACCAAGAAGAGTTACTGA

Translation (199 aa):
MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLESKLGKTIVITK
TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVNKKKMEEKQKDY
DFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGFSGFGSTKKSY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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