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Report for CCDS42346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42346.1 Public Homo sapiens 17 UBTF 24 110 108 CCDS HistoryNCBI Gene:7343Re-query CCDS DB by CCDS ID:42346.1Re-query CCDS DB by GeneID:7343See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42346.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343638.9 ENSP00000345297.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343638.9Link to Ensembl Protein Viewer:ENSP00000345297.5Re-query CCDS DB by Nucleotide ID:ENST00000343638Re-query CCDS DB by Protein ID:ENSP00000345297
Original member Current member EBI ENST00000393606.7 ENSP00000377231.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393606.7Link to Ensembl Protein Viewer:ENSP00000377231.3Re-query CCDS DB by Nucleotide ID:ENST00000393606Re-query CCDS DB by Protein ID:ENSP00000377231
Original member Current member EBI ENST00000526094.5 ENSP00000432925.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526094.5Link to Ensembl Protein Viewer:ENSP00000432925.1Re-query CCDS DB by Nucleotide ID:ENST00000526094Re-query CCDS DB by Protein ID:ENSP00000432925
Original member Current member EBI ENST00000533177.5 ENSP00000437180.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533177.5Link to Ensembl Protein Viewer:ENSP00000437180.1Re-query CCDS DB by Nucleotide ID:ENST00000533177Re-query CCDS DB by Protein ID:ENSP00000437180
Original member Current member EBI ENST00000704742.1 ENSP00000516020.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704742.1Link to Ensembl Protein Viewer:ENSP00000516020.1Re-query CCDS DB by Nucleotide ID:ENST00000704742Re-query CCDS DB by Protein ID:ENSP00000516020
Original member Current member NCBI NM_001076683.2 NP_001070151.1 Accepted alive Link to Nucleotide Sequence:NM_001076683.2Link to Protein Sequence:NP_001070151.1Re-query CCDS DB by Nucleotide ID:NM_001076683Re-query CCDS DB by Protein ID:NP_001070151Link to BLAST:NP_001070151.1
Original member Current member NCBI NM_001076684.3 NP_001070152.1 Accepted alive Link to Nucleotide Sequence:NM_001076684.3Link to Protein Sequence:NP_001070152.1Re-query CCDS DB by Nucleotide ID:NM_001076684Re-query CCDS DB by Protein ID:NP_001070152Link to BLAST:NP_001070152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070151.1 727 P17480-2 727 100% 0 0
NP_001070152.1 727 P17480-2 727 100% 0 0

Chromosomal Locations for CCDS 42346.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44207242 44207367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44207454 44207597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44207699 44207770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44207864 44207911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44209352 44209541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44209645 44209733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44210124 44210234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44210318 44210473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44210792 44210947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44211039 44211152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44211290 44211331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44211606 44211747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44211873 44212006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44212819 44212939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44213218 44213282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44215654 44215809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44215906 44215989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44216529 44216704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44218172 44218229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGAACGGAGAAGCCGACTGCCCCACAGACCTGGAAATGGCCGCCCCCAAAGGCCAAGACCGTTGGTCCC
AGGAAGACATGCTGACTTTGCTGGAATGCATGAAGAACAACCTTCCATCCAATGACAGCTCCAAGTTCAA
AACCACCGAATCACACATGGACTGGGAAAAAGTAGCATTTAAAGACTTTTCTGGAGACATGTGCAAGCTC
AAATGGGTGGAGATTTCTAATGAGGTGAGGAAGTTCCGTACATTGACAGAATTGATCCTCGATGCTCAGG
AACATGTTAAAAATCCTTACAAAGGCAAAAAACTCAAGAAACACCCAGACTTCCCAAAGAAGCCCCTGAC
CCCTTATTTCCGCTTCTTCATGGAGAAGCGGGCCAAGTATGCGAAACTCCACCCTGAGATGAGCAACCTG
GACCTAACCAAGATTCTGTCCAAGAAATACAAGGAGCTTCCGGAGAAGAAGAAGATGAAATATATTCAGG
ACTTCCAGAGAGAGAAACAGGAGTTCGAGCGAAACCTGGCCCGATTCAGGGAGGATCACCCCGACCTAAT
CCAGAATGCCAAGAAATCGGACATCCCAGAGAAGCCCAAAACCCCCCAGCAGCTGTGGTACACCCACGAG
AAGAAGGTGTATCTCAAAGTGCGGCCAGATGAGATCATGAGAGACTATATCCAGAAGCACCCAGAGCTGA
ACATCAGTGAGGAGGGTATCACCAAGTCCACCCTCACCAAGGCCGAACGCCAGCTCAAGGACAAGTTTGA
CGGGCGACCCACCAAGCCACCTCCGAACAGCTACTCGCTGTACTGCGCAGAGCTCATGGCCAACATGAAG
GACGTGCCCAGCACAGAGCGCATGGTGCTGTGCAGCCAGCAGTGGAAGCTGCTGTCCCAGAAGGAGAAGG
ACGCCTATCACAAGAAGTGTGATCAGAAAAAGAAAGATTACGAGGTGGAGCTGCTCCGTTTCCTCGAGAG
CCTGCCTGAGGAGGAGCAGCAGCGGGTCTTGGGGGAAGAGAAGATGCTGAACATCAACAAGAAGCAGGCC
ACCAGCCCCGCCTCCAAGAAGCCAGCCCAGGAAGGGGGCAAGGGCGGCTCCGAGAAGCCCAAGCGGCCCG
TGTCGGCCATGTTCATCTTCTCGGAGGAGAAACGGCGGCAGCTGCAGGAGGAGCGGCCTGAGCTCTCCGA
GAGCGAGCTGACCCGCCTGCTGGCCCGAATGTGGAACGACCTGTCTGAGAAGAAGAAGGCCAAGTACAAG
GCCCGAGAGGCGGCGCTCAAGGCTCAGTCGGAGAGGAAGCCCGGCGGGGAGCGCGAGGAACGGGGCAAGC
TGCCCGAGTCCCCCAAAAGAGCTGAGGAGATCTGGCAACAGAGCGTTATCGGCGACTACCTGGCCCGCTT
CAAGAATGACCGGGTGAAGGCCTTGAAAGCCATGGAAATGACCTGGAATAACATGGAAAAGAAGGAGAAA
CTGATGTGGATTAAGAAGGCAGCCGAAGACCAAAAGCGATATGAGAGAGAGCTGAGTGAGATGCGGGCAC
CTCCAGCTGCTACAAATTCTTCCAAGAAGATGAAATTCCAGGGAGAACCCAAGAAGCCTCCCATGAACGG
TTACCAGAAGTTCTCCCAGGAGCTGCTGTCCAATGGGGAGCTGAACCACCTGCCGCTGAAGGAGCGCATG
GTGGAGATCGGCAGTCGCTGGCAGCGCATCTCCCAGAGCCAGAAGGAGCACTACAAAAAGCTGGCCGAGG
AGCAGCAAAAGCAGTACAAGGTGCACCTGGACCTCTGGGTTAAGAGCCTGTCTCCCCAGGACCGTGCAGC
ATATAAAGAGTACATCTCCAATAAACGTAAGAGCATGACCAAGCTGCGAGGCCCAAACCCCAAATCCAGC
CGGACTACTCTGCAGTCCAAGTCGGAGTCCGAGGAGGATGATGAAGAGGATGAGGATGACGAGGACGAGG
ATGAAGAAGAGGAAGATGATGAGAATGGGGACTCCTCTGAAGATGGCGGCGACTCCTCTGAGTCCAGCAG
CGAGGACGAGAGCGAGGATGGGGATGAGAATGAAGAGGATGACGAGGACGAAGACGACGACGAGGATGAC
GATGAGGATGAAGATAATGAGTCCGAGGGCAGCAGCTCCAGCTCCTCCTCCTCAGGGGACTCCTCAGACT
CTGACTCCAACTGA

Translation (727 aa):
MNGEADCPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCKL
KWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNL
DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHE
KKVYLKVRPDEIMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK
DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA
TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYK
AREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEK
LMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERM
VEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSS
RTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD
DEDEDNESEGSSSSSSSSGDSSDSDSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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