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Report for CCDS42174.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42174.3 Public Homo sapiens 16 CES4A 24 110 108 CCDS HistoryNCBI Gene:283848Re-query CCDS DB by CCDS ID:42174.3Re-query CCDS DB by GeneID:283848See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 42174.1
The coding region has been updated to represent an alternative splicing pattern and to shorten to N-terminus to one that is more consistent with the available transcript and protein data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 42174.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540947.6 ENSP00000444052.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540947.6Link to Ensembl Protein Viewer:ENSP00000444052.2Re-query CCDS DB by Nucleotide ID:ENST00000540947Re-query CCDS DB by Protein ID:ENSP00000444052
Original member Current member NCBI NM_173815.7 NP_776176.5 Accepted alive Link to Nucleotide Sequence:NM_173815.7Link to Protein Sequence:NP_776176.5Re-query CCDS DB by Nucleotide ID:NM_173815Re-query CCDS DB by Protein ID:NP_776176Link to BLAST:NP_776176.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776176.5 468 Q5XG92-5 468 100% 0 0

Chromosomal Locations for CCDS 42174.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 66988773 66988830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66995628 66995829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67000638 67000779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67000857 67000990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67001308 67001461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67003070 67003174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67003256 67003360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67003515 67003553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67004084 67004224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67004793 67004873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67005240 67005393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67008974 67009065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGAGGTGGATTCTGTGCTGGAGCCTCACCCTCTGCCTGATGGCGCAGACGGCCTTGGGTGCCTTGCACA
CCAAGAGGCCTCAAGTGGTCACCAAATATGGAACCCTGCAAGGAAAACAGATGCATGTGGGGAAGACACC
CATCCAAGTCTTTTTAGGAGTCCCCTTCTCCAGACCTCCTCTAGGTATCCTCAGGTTTGCACCTCCAGAA
CCCCCGGAGCCCTGGAAAGGAATCAGAGATGCTACCACCTACCCGCCTGGGTGCCTGCAGGAGTCCTGGG
GCCAGCTGGCCTCGATGTACGTCAGCACGCGGGAACGGTACAAGTGGCTGCGCTTCAGCGAGGACTGTCT
GTACCTGAACGTGTACGCGCCGGCGCGCGCGCCCGGGGATCCCCAGCTGCCAGTGATGGTCTGGTTCCCG
GGAGGCGCCTTCATCGTGGGCGCTGCTTCTTCGTACGAGGGCTCTGACTTGGCCGCCCGCGAGAAAGTGG
TGCTGGTGTTTCTGCAGCACAGGCTCGGCATCTTCGGCTTCCTGAGCACGGACGACAGCCACGCGCGCGG
GAACTGGGGGCTGCTGGACCAGATGGCGGCTCTGCGCTGGGTGCAGGAGAACATCGCAGCCTTCGGGGGA
GACCCAGGAAATGTGACCCTGTTCGGCCAGTCGGCGGGGGCCATGAGCATCTCAGGACTGATGATGTCAC
CCCTAGCCTCGGGTCTCTTCCATCGGGCCATTTCCCAGAGTGGCACCGCGTTATTCAGACTTTTCATCAC
TAGTAACCCACTGAAAGTGGCCAAGAAGGTTGCCCACCTGGCTGGATGCAACCACAACAGCACACAGATC
CTGGTAAACTGCCTGAGGGCACTATCAGGGACCAAGGTGATGCGTGTGTCCAACAAGATGAGATTCCTCC
AACTGAACTTCCAGAGAGACCCGGAAGAGATTATCTGGTCCATGAGCCCTGTGGTGGATGGTGTGGTGAT
CCCAGATGACCCTTTGGTGCTCCTGACCCAGGGGAAGGTTTCATCTGTGCCCTACCTTCTAGGTGTCAAC
AACCTGGAATTCAATTGGCTCTTGCCTTATATCATGAAGTTCCCGCTAAACCGGCAGGCGATGAGAAAGG
AAACCATCACTAAGATGCTCTGGAGTACCCGCACCCTGTTGAATATCACCAAGGAGCAGGTACCACTTGT
GGTGGAGGAGTACCTGGACAATGTCAATGAGCATGACTGGAAGATGCTACGAAACCGTATGATGGACATA
GTTCAAGATGCCACTTTCGTGTATGCCACACTGCAGACTGCTCACTACCACCGAGAAACCCCAATGATGG
GAATCTGCCCTGCTGGCCACGCTACAACAAGGATGAAAAGTACCTGCAGCTGGATTTTACCACAAGAGTG
GGCATGA

Translation (468 aa):
MRWILCWSLTLCLMAQTALGALHTKRPQVVTKYGTLQGKQMHVGKTPIQVFLGVPFSRPPLGILRFAPPE
PPEPWKGIRDATTYPPGCLQESWGQLASMYVSTRERYKWLRFSEDCLYLNVYAPARAPGDPQLPVMVWFP
GGAFIVGAASSYEGSDLAAREKVVLVFLQHRLGIFGFLSTDDSHARGNWGLLDQMAALRWVQENIAAFGG
DPGNVTLFGQSAGAMSISGLMMSPLASGLFHRAISQSGTALFRLFITSNPLKVAKKVAHLAGCNHNSTQI
LVNCLRALSGTKVMRVSNKMRFLQLNFQRDPEEIIWSMSPVVDGVVIPDDPLVLLTQGKVSSVPYLLGVN
NLEFNWLLPYIMKFPLNRQAMRKETITKMLWSTRTLLNITKEQVPLVVEEYLDNVNEHDWKMLRNRMMDI
VQDATFVYATLQTAHYHRETPMMGICPAGHATTRMKSTCSWILPQEWA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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