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Report for CCDS42112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42112.1 Public Homo sapiens 16 ZNF200 24 110 108 CCDS HistoryNCBI Gene:7752Re-query CCDS DB by CCDS ID:42112.1Re-query CCDS DB by GeneID:7752See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42112.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396868.7 ENSP00000380077.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396868.7Link to Ensembl Protein Viewer:ENSP00000380077.3Re-query CCDS DB by Nucleotide ID:ENST00000396868Re-query CCDS DB by Protein ID:ENSP00000380077
Original member Current member NCBI NM_198087.3 NP_932353.1 Accepted alive Link to Nucleotide Sequence:NM_198087.3Link to Protein Sequence:NP_932353.1Re-query CCDS DB by Nucleotide ID:NM_198087Re-query CCDS DB by Protein ID:NP_932353Link to BLAST:NP_932353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932353.1 394 P98182-2 394 100% 0 0

Chromosomal Locations for CCDS 42112.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3223892 3224613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3232421 3232544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3232833 3232921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3233506 3233755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGATGGCTGCAAAAGTGGTTCCTATGCCCCCAAAGCCAAAGCAGTCCTTTATACTGAGAGTTCCGCCAG
ACTCCAAGCTGGGCCAAGACCTACTTCGAGATGCCACTAACGGGCCCAAGACCATCCACCAGCTAGTGCT
GGAGCACTTCCTCACCTTCTTGCCCAAGCCAAGCCTGGTCCAGCCCAGTCAGAAAGTCAAGGAGACCTTG
GTTATTATGAAAGATGTGAGCTCAAGCCTTCAGAACAGAGTGCATCCTCGTCCCTTGGTGAAGCTTCTGC
CCAAAGGAGTCCAAAAGGAACAAGAGACAGTGTCTCTGTATTTGAAAGCTAACCCTGAGCTGGTGGTCTT
TGAGGATTTGAATGTATTTCACTGCCAGGAAGAATGTGTGAGCTTGGATCCTACTCAACAACTCACGTCA
GAGAAGGAAGATGACAGCAGTGTCGGGGAAATGATGTTACTGGCAGTCAATGGCAGTAATCCTGAAGGTG
AAGATCCTGAGAGGGAACCTGTAGAAAATGAAGATTATAGAGAAAAGTCTTCAGATGATGATGAAATGGA
TTCTTCCTTGGTCTCTCAGCAGCCTCCCGATAACCAGGAAAAGGAACGACTAAATACATCCATTCCACAA
AAAAGGAAAATGAGAAATCTGTTAGTTACCATTGAGAATGATACTCCTCTAGAGGAACTCTCAAAATATG
TAGACATCAGTATTATTGCCCTTACTCGAAATCGGAGGACAAGGAGATGGTACACTTGTCCACTGTGTGG
GAAACAGTTTAATGAAAGTTCTTACCTCATTTCCCACCAGAGGACCCACACTGGAGAAAAACCCTATGAC
TGTAATCACTGTGGGAAAAGCTTCAATCATAAAACAAACCTCAATAAACATGAGCGAATTCATACAGGAG
AGAAACCTTATTCCTGTTCTCAGTGTGGAAAAAACTTCCGTCAGAATTCTCATCGGAGTCGTCATGAAGG
AATCCATATAAGGGAGAAGATATTTAAGTGTCCAGAATGTGGGAAAACCTTCCCAAAGAATGAGGAGTTT
GTGCTTCATCTGCAGAGTCATGAGGCTGAGAGACCATATGGTTGCAAAAAATGTGGGAGAAGATTTGGTC
GGCTGTCAAACTGTACCCGGCATGAGAAAACCCACTCAGCCTGTAAGACCCGAAAGCAGAAGTAA

Translation (394 aa):
MMAAKVVPMPPKPKQSFILRVPPDSKLGQDLLRDATNGPKTIHQLVLEHFLTFLPKPSLVQPSQKVKETL
VIMKDVSSSLQNRVHPRPLVKLLPKGVQKEQETVSLYLKANPELVVFEDLNVFHCQEECVSLDPTQQLTS
EKEDDSSVGEMMLLAVNGSNPEGEDPEREPVENEDYREKSSDDDEMDSSLVSQQPPDNQEKERLNTSIPQ
KRKMRNLLVTIENDTPLEELSKYVDISIIALTRNRRTRRWYTCPLCGKQFNESSYLISHQRTHTGEKPYD
CNHCGKSFNHKTNLNKHERIHTGEKPYSCSQCGKNFRQNSHRSRHEGIHIREKIFKCPECGKTFPKNEEF
VLHLQSHEAERPYGCKKCGRRFGRLSNCTRHEKTHSACKTRKQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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