NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42059.1 Public Homo sapiens 15 CCDC33 24 110 108 CCDS HistoryNCBI Gene:80125Re-query CCDS DB by CCDS ID:42059.1Re-query CCDS DB by GeneID:80125See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268082.4 ENSP00000268082.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000268082.4Link to Ensembl Protein Viewer:ENSP00000268082.4Re-query CCDS DB by Nucleotide ID:ENST00000268082Re-query CCDS DB by Protein ID:ENSP00000268082
Original member Current member NCBI NM_182791.4 NP_877592.2 Accepted alive Link to Nucleotide Sequence:NM_182791.4Link to Protein Sequence:NP_877592.2Re-query CCDS DB by Nucleotide ID:NM_182791Re-query CCDS DB by Protein ID:NP_877592Link to BLAST:NP_877592.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877592.2 367 Q8N5R6-5 367 100% 0 0

Chromosomal Locations for CCDS 42059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74318590 74318658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74330189 74330354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74330663 74330751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74330981 74331112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74331203 74331296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74332679 74332845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74333221 74333322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74333881 74333967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74334975 74335172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGGGGAGCCAGGGCCCCCATCCCCTCCAGCCCCCAAGGCTGCCCCAGGCCTCATTGACAGCTTCTCTG
AGATGAACAACTACCGGCGGGCCATGCAGAAGATGGCAGAGGACATCCTGTCTCTGCGGAGACAGGCCAG
CATCCTGGAAGGAGAGAACCGCATACTGAGGAGCCGCCTGGCCCAGCAGGAGGAGGAAGAGGGGCAGGGC
AAAGCCAGTGAGGCCCAGAACACGGTGTCCATGAAGCAGAAACTGCTGCTGAGTGAGCTGGATATGAAGA
AACTGAGGGACAGGGTGCAGCATTTGCAGAATGAGCTGATTCGAAAGAATGATCGAGAGAAGGAGCTGCT
CCTTCTGTATCAGGCCCAGCAGCCACAGGCCGCTCTGCTGAAGCAGTACCAGGGCAAGCTGCAGAAGATG
AAGGCGCTGGAGGAGACTGTGCGGCACCAAGAGAAGGTGATCGAGAAGATGGAGCGGGTGCTGGAGGACA
GGCTGCAGGACAGGAGCAAGCCCCCTCCTCTGAACAGGCAGCAGGGAAAGCCCTACACGGGCTTCCCTAT
GCTCTCAGCCTCTGGCCTTCCCTTGGGTTCTATGGGAGAGAACCTGCCGGTTGAACTTTACTCGGTGCTG
CTGGCAGAAAACGCGAAGCTGCGGACGGAGCTGGATAAGAACCGCCACCAGCAGGCCCCCATCATTCTGC
AGCAACAGGCCCTGCCGGTGGACCCCGGGGAGTTGGGAGCAGGAGGAGACTTGACAGAGAGGCTACAAGA
GACGCATGGCCCAGGCCACTCAGAGTGCACAGAGACCCTGCCCGCACAGGATCTCCTCTCTGGTACTTCA
GACAAGTTCAACCTCCTGGCCAAGCTGGAACACGCTCAGAGCCGGATCCTGTCCCTGGAAAGCCAGTTAG
AGGACTCAGCTCGACGCTGGGGACGAGAGAAGCAGGATCTGGCCACACGGCTGCAGGAGCAAGAAAAAGG
TTTCAGGCACCCCTCGAACTCCATCATCATAGAACAGCCTGTGAGTGACCCCCCTGGAGTAGCTCCCAGG
GGTTCAGGTGGTGGAGCAGGAAGCCACCGCACCCCCAAAGTCACTGGGCCCTGA

Translation (367 aa):
MGEPGPPSPPAPKAAPGLIDSFSEMNNYRRAMQKMAEDILSLRRQASILEGENRILRSRLAQQEEEEGQG
KASEAQNTVSMKQKLLLSELDMKKLRDRVQHLQNELIRKNDREKELLLLYQAQQPQAALLKQYQGKLQKM
KALEETVRHQEKVIEKMERVLEDRLQDRSKPPPLNRQQGKPYTGFPMLSASGLPLGSMGENLPVELYSVL
LAENAKLRTELDKNRHQQAPIILQQQALPVDPGELGAGGDLTERLQETHGPGHSECTETLPAQDLLSGTS
DKFNLLAKLEHAQSRILSLESQLEDSARRWGREKQDLATRLQEQEKGFRHPSNSIIIEQPVSDPPGVAPR
GSGGGAGSHRTPKVTGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH