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Report for CCDS41464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41464.1 Public Homo sapiens 1 ATF3 24 110 108 CCDS HistoryNCBI Gene:467Re-query CCDS DB by CCDS ID:41464.1Re-query CCDS DB by GeneID:467See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41464.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366983.5 ENSP00000355950.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366983.5Link to Ensembl Protein Viewer:ENSP00000355950.1Re-query CCDS DB by Nucleotide ID:ENST00000366983Re-query CCDS DB by Protein ID:ENSP00000355950
Original member Current member EBI ENST00000464547.5 ENSP00000432208.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000464547.5Link to Ensembl Protein Viewer:ENSP00000432208.1Re-query CCDS DB by Nucleotide ID:ENST00000464547Re-query CCDS DB by Protein ID:ENSP00000432208
Original member Current member NCBI NM_001040619.3 NP_001035709.1 Accepted alive Link to Nucleotide Sequence:NM_001040619.3Link to Protein Sequence:NP_001035709.1Re-query CCDS DB by Nucleotide ID:NM_001040619Re-query CCDS DB by Protein ID:NP_001035709Link to BLAST:NP_001035709.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035709.1 135 P18847-3 135 100% 0 0

Chromosomal Locations for CCDS 41464.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 212615022 212615261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212618127 212618234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212619046 212619105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGATGCTTCAACACCCAGGCCAGGTCTCTGCCTCGGAAGTGAGTGCTTCTGCCATCGTCCCCTGCCTGT
CCCCTCCTGGGTCACTGGTGTTTGAGGATTTTGCTAACCTGACGCCCTTTGTCAAGGAAGAGCTGAGGTT
TGCCATCCAGAACAAGCACCTCTGCCACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGCGACAGA
CCCCTCGGGGTGTCCATCACAAAAGCCGAGGTAGCCCCTGAAGAAGATGAAAGGAAAAAGAGGCGACGAG
AAAGAAATAAGATTGCAGCTGCAAAGTGCCGAAACAAGAAGAAGGAGAAGACGGAGTGCCTGCAGAAACT
CCCAAGGCCCTTTTGGGTCCAGAAGACCTGCATATGGGCTGTTGACTCATGCAAATGA

Translation (135 aa):
MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSSALESVTVSDR
PLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRPFWVQKTCIWAVDSCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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