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Report for CCDS41270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41270.1 Public Homo sapiens 1 FAM131C 24 110 108 CCDS HistoryNCBI Gene:348487Re-query CCDS DB by CCDS ID:41270.1Re-query CCDS DB by GeneID:348487See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375662.5 ENSP00000364814.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375662.5Link to Ensembl Protein Viewer:ENSP00000364814.4Re-query CCDS DB by Nucleotide ID:ENST00000375662Re-query CCDS DB by Protein ID:ENSP00000364814
Original member Current member NCBI NM_182623.3 NP_872429.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182623.3Link to Protein Sequence:NP_872429.2Re-query CCDS DB by Nucleotide ID:NM_182623Re-query CCDS DB by Protein ID:NP_872429Link to BLAST:NP_872429.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872429.2 280 Q96AQ9 280 100% 0 0

Chromosomal Locations for CCDS 41270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16058437 16058717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16059494 16059604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16059869 16060051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16062099 16062192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16062499 16062534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16063521 16063636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16073421 16073442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGGCTCCTGCGTGTCGCGAGACCTGTTCACAAGTGCCCACAAGAACTGCCCCATGCCCCAGGGTGCGG
ACCCCTTGAACCCAGATCTGCCCTCGGGCCGCACTCCCACCGTGGCTCCAGACTGTGTCATTGGCAAGGA
CAAACAGATGGATTTCTGTTGGGATCCTTGGCAGAGGTGCTTCCAGACCACCAACGGCTACCTGTCCGAC
TCCAGATCCCGCCCCGGCAACTACAACGTGGCAGCCCTGGCCACCTCGTCCCTTGTGGGGGTGGTGCAGA
GCATCAAGGACCACATCACAAAGCCCACGGCCATGGCCCGAGGCCGCGTGGCCCACCTCATCGAGTGGAA
GGGCTGGAGTGCCCAGCCGGCAGGCTGGGAGCTGTCCCCAGCTGAGGACGAGCATTACTGCTGCCTCCCG
GATGAGCTGCGTGAGGCCCGCTTTGCTGCAGGGGTCGCCGAGCAGTTTGCCATCACAGAGGCCACACTGA
GCGCTTGGTCCTCGCTGGACGAAGAGGAGCTGCACCCCGAGAACAGCCCCCAAGGCATCGTCCAGCTCCA
AGATCTGGAGAGCATCTACCTTCAGGACAGCCTTCCCAGCGGCCCCTCACAGGATGACAGCCTTCAGGCC
TTCTCCTCGCCCAGCCCCTCCCCTGACAGCTGTCCCTCACCTGAGGAGCCCCCCAGCACCGCTGGCATCC
CGCAGCCCCCCAGCCCAGAGCTGCAGCATCGGCGGCGGCTGCCCGGGGCCCAAGGACCCGAGGGTGGGAC
CCACCCCCCGGGCTCCCTCCCCTCCATGGACAGCGGCTCCCTCTGGGAGGAGGACGAGGTGTTCTATAAC
TGA

Translation (280 aa):
MGSCVSRDLFTSAHKNCPMPQGADPLNPDLPSGRTPTVAPDCVIGKDKQMDFCWDPWQRCFQTTNGYLSD
SRSRPGNYNVAALATSSLVGVVQSIKDHITKPTAMARGRVAHLIEWKGWSAQPAGWELSPAEDEHYCCLP
DELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSPQGIVQLQDLESIYLQDSLPSGPSQDDSLQA
FSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPGSLPSMDSGSLWEEDEVFYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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