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Report for CCDS41221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41221.1 Public Homo sapiens 1 OR4F16 24 110 108 CCDS HistoryNCBI Gene:81399Re-query CCDS DB by CCDS ID:41221.1Re-query CCDS DB by GeneID:81399See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41221.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332831.5 ENSP00000329982.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332831.5Link to Ensembl Protein Viewer:ENSP00000329982.2Re-query CCDS DB by Nucleotide ID:ENST00000332831Re-query CCDS DB by Protein ID:ENSP00000329982
Original member Current member NCBI NM_001005277.1 NP_001005277.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005277.1Link to Protein Sequence:NP_001005277.1Re-query CCDS DB by Nucleotide ID:NM_001005277Re-query CCDS DB by Protein ID:NP_001005277Link to BLAST:NP_001005277.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005277.1 312 Q6IEY1 312 100% 0 0

Chromosomal Locations for CCDS 41221.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 685716 686654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCATGGGAGATCC
AGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACTGGAAACATCCTCATTGTGTT
TTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTACTTTCTACTGGCCAGTCTCTCCTTCATTGAC
TTAGGAGCCTGCTCTGTCACTTCTCCCAAGATGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCT
TTGGAGGCTGCATCGCTCAAATCTTCTTCATCCACGTCGTTGGTGGTGTGGAGATGGTGCTGCTCATAGC
CATGGCCTTTGACAGATATGTGGCCCTATGTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATG
TGCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGGTGTCAGTCACTCCCTGTTCCAACTGGCATTTCTTG
TTAATTTAGCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACCTTCCTCGGCTTCTCAGACT
AGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACTGTTAACAGTGGGTTTATCTGTGTGGGTACT
TTCTTCATACTTCTAATCTCCTACGTCTTCATCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCAT
CCAAGGCCCTTTCCACTCTTTCAGCTCACAGCACAGTGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGT
GTATACACGGCCACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCT
TTTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGAGTATGCAAAC
AGCTAGTGATTTACAAGAGGATCTCATAA

Translation (312 aa):
MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMYFLLASLSFID
LGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCKPLHYLTIMSPRM
CLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCDLPRLLRLACTDTYRLQFMVTVNSGFICVGT
FFILLISYVFILFTVWKHSSGGSSKALSTLSAHSTVVLLFFGPPMFVYTRPHPNSQMDKFLAIFDAVLTP
FLNPVVYTFRNKEMKAAIKRVCKQLVIYKRIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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