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Report for CCDS41209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41209.1 Public Mus musculus X Tlr8 23 108 98 CCDS HistoryNCBI Gene:170744Re-query CCDS DB by CCDS ID:41209.1Re-query CCDS DB by GeneID:170744See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049023.2 ENSMUSP00000036762.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049023.2Link to Ensembl Protein Viewer:ENSMUSP00000036762.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000049023Re-query CCDS DB by Protein ID:ENSMUSP00000036762
Original member Current member EBI ENSMUST00000112170.1 ENSMUSP00000107793.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112170.1Link to Ensembl Protein Viewer:ENSMUSP00000107793.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112170Re-query CCDS DB by Protein ID:ENSMUSP00000107793
Original member Current member NCBI NM_133212.3 NP_573475.2 Accepted alive Link to Nucleotide Sequence:NM_133212.3Link to Protein Sequence:NP_573475.2Re-query CCDS DB by Nucleotide ID:NM_133212Re-query CCDS DB by Protein ID:NP_573475Link to BLAST:NP_573475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573475.2 1032 P58682 1032 100% 0 0

Chromosomal Locations for CCDS 41209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 167242754 167245849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167263749 167263751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3099 nt):
ATGGAAAACATGCCCCCTCAGTCATGGATTCTGACGTGCTTTTGTCTGCTGTCCTCTGGAACCAGTGCCA
TCTTCCATAAAGCGAACTATTCCAGAAGCTATCCTTGTGACGAGATAAGGCACAACTCCCTTGTGATTGC
AGAATGCAACCATCGTCAACTGCATGAAGTTCCCCAAACTATAGGCAAGTATGTGACAAACATAGACTTG
TCAGACAATGCCATTACACATATAACGAAAGAGTCCTTTCAAAAGCTGCAAAACCTCACTAAAATCGATC
TGAACCACAATGCCAAACAACAGCACCCAAATGAAAATAAAAATGGTATGAATATTACAGAAGGGGCACT
TCTCAGCCTAAGAAATCTAACAGTTTTACTGCTGGAAGACAACCAGTTATATACTATACCTGCTGGGTTG
CCTGAGTCTTTGAAAGAACTTAGCCTAATTCAAAACAATATATTTCAGGTAACTAAAAACAACACTTTTG
GGCTTAGGAACTTGGAAAGACTCTATTTGGGCTGGAACTGCTATTTTAAATGTAATCAAACCTTTAAGGT
AGAAGATGGGGCATTTAAAAATCTTATACACTTGAAGGTACTCTCATTATCTTTCAATAACCTTTTCTAT
GTGCCCCCCAAACTACCAAGTTCTCTAAGGAAACTTTTTCTGAGTAATGCCAAAATCATGAACATCACTC
AGGAAGACTTCAAAGGACTGGAAAATTTAACATTACTAGATCTGAGTGGAAACTGTCCAAGGTGTTACAA
TGCTCCATTTCCTTGCACACCTTGCAAGGAAAACTCATCCATCCACATACATCCTCTGGCTTTTCAAAGT
CTCACCCAACTTCTCTATCTAAACCTTTCCAGCACTTCCCTCAGGACGATTCCTTCTACCTGGTTTGAAA
ATCTGTCAAATCTGAAGGAACTCCATCTTGAATTCAACTATTTAGTTCAAGAAATTGCCTCGGGGGCATT
TTTAACAAAACTACCCAGTTTACAAATCCTTGATTTGTCCTTCAACTTTCAATATAAGGAATATTTACAA
TTTATTAATATTTCCTCAAATTTCTCTAAGCTTCGTTCTCTCAAGAAGTTGCACTTAAGAGGCTATGTGT
TCCGAGAACTTAAAAAGAAGCATTTCGAGCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTTGGG
CATTAACTTTATTGAGAAAATTGATTTCAAAGCTTTCCAGAATTTTTCCAAACTCGACGTTATCTATTTA
TCAGGAAATCGCATAGCATCTGTATTAGATGGTACAGATTATTCCTCTTGGCGAAATCGTCTTCGGAAAC
CTCTCTCAACAGACGATGATGAGTTTGATCCACACGTGAATTTTTACCATAGCACCAAACCTTTAATAAA
GCCACAGTGTACTGCTTATGGCAAGGCCTTGGATTTAAGTTTGAACAATATTTTCATTATTGGGAAAAGC
CAATTTGAAGGTTTTCAGGATATCGCCTGCTTAAATCTGTCCTTCAATGCCAATACTCAAGTGTTTAATG
GCACAGAATTCTCCTCCATGCCCCACATTAAATATTTGGATTTAACCAACAACAGACTAGACTTTGATGA
TAACAATGCTTTCAGTGATCTTCACGATCTAGAAGTGCTGGACCTGAGCCACAATGCACACTATTTCAGT
ATAGCAGGGGTAACGCACCGTCTAGGATTTATCCAGAACTTAATAAACCTCAGGGTGTTAAACCTGAGCC
ACAATGGCATTTACACCCTCACAGAGGAAAGTGAGCTGAAAAGCATCTCACTGAAAGAATTGGTTTTCAG
TGGAAATCGTCTTGACCGTTTGTGGAATGCAAATGATGGCAAATACTGGTCCATTTTTAAAAGTCTCCAG
AATTTGATACGCCTGGACTTATCATACAATAACCTTCAACAAATCCCAAATGGAGCATTCCTCAATTTGC
CTCAGAGCCTCCAAGAGTTACTTATCAGTGGTAACAAATTACGTTTCTTTAATTGGACATTACTCCAGTA
TTTTCCTCACCTTCACTTGCTGGATTTATCGAGAAATGAGCTGTATTTTCTACCCAATTGCCTATCTAAG
TTTGCACATTCCCTGGAGACACTGCTACTGAGCCATAATCATTTCTCTCACCTACCCTCTGGCTTCCTCT
CCGAAGCCAGGAATCTGGTGCACCTGGATCTAAGTTTCAACACAATAAAGATGATCAATAAATCCTCCCT
GCAAACCAAGATGAAAACGAACTTGTCTATTCTGGAGCTACATGGGAACTATTTTGACTGCACGTGTGAC
ATAAGTGATTTTCGAAGCTGGCTAGATGAAAATCTGAATATCACAATTCCTAAATTGGTAAATGTTATAT
GTTCCAATCCTGGGGATCAAAAATCAAAGAGTATCATGAGCCTAGATCTCACGACTTGTGTATCGGATAC
CACTGCAGCTGTCCTGTTTTTCCTCACATTCCTTACCACCTCCATGGTTATGTTGGCTGCTCTGGTTCAC
CACCTGTTTTACTGGGATGTTTGGTTTATCTATCACATGTGCTCTGCTAAGTTAAAAGGCTACAGGACTT
CATCCACATCCCAAACTTTCTATGATGCTTATATTTCTTATGACACCAAAGATGCATCTGTTACTGACTG
GGTAATCAATGAACTGCGCTACCACCTTGAAGAGAGTGAAGACAAAAGTGTCCTCCTTTGTTTAGAGGAG
AGGGATTGGGATCCAGGATTACCCATCATTGATAACCTCATGCAGAGCATAAACCAGAGCAAGAAAACAA
TCTTTGTTTTAACCAAGAAATATGCCAAGAGCTGGAACTTTAAAACAGCTTTCTACTTGGCCTTGCAGAG
GCTAATGGATGAGAACATGGATGTGATTATTTTCATCCTCCTGGAACCAGTGTTACAGTACTCACAGTAC
CTGAGGCTTCGGCAGAGGATCTGTAAGAGCTCCATCCTCCAGTGGCCCAACAATCCCAAAGCAGAAAACT
TGTTTTGGCAAAGTCTGAAAAATGTGGTCTTGACTGAAAATGATTCACGGTATGACGATTTGTACATTGA
TTCCATTAGGCAATACTAG

Translation (1032 aa):
MENMPPQSWILTCFCLLSSGTSAIFHKANYSRSYPCDEIRHNSLVIAECNHRQLHEVPQTIGKYVTNIDL
SDNAITHITKESFQKLQNLTKIDLNHNAKQQHPNENKNGMNITEGALLSLRNLTVLLLEDNQLYTIPAGL
PESLKELSLIQNNIFQVTKNNTFGLRNLERLYLGWNCYFKCNQTFKVEDGAFKNLIHLKVLSLSFNNLFY
VPPKLPSSLRKLFLSNAKIMNITQEDFKGLENLTLLDLSGNCPRCYNAPFPCTPCKENSSIHIHPLAFQS
LTQLLYLNLSSTSLRTIPSTWFENLSNLKELHLEFNYLVQEIASGAFLTKLPSLQILDLSFNFQYKEYLQ
FINISSNFSKLRSLKKLHLRGYVFRELKKKHFEHLQSLPNLATINLGINFIEKIDFKAFQNFSKLDVIYL
SGNRIASVLDGTDYSSWRNRLRKPLSTDDDEFDPHVNFYHSTKPLIKPQCTAYGKALDLSLNNIFIIGKS
QFEGFQDIACLNLSFNANTQVFNGTEFSSMPHIKYLDLTNNRLDFDDNNAFSDLHDLEVLDLSHNAHYFS
IAGVTHRLGFIQNLINLRVLNLSHNGIYTLTEESELKSISLKELVFSGNRLDRLWNANDGKYWSIFKSLQ
NLIRLDLSYNNLQQIPNGAFLNLPQSLQELLISGNKLRFFNWTLLQYFPHLHLLDLSRNELYFLPNCLSK
FAHSLETLLLSHNHFSHLPSGFLSEARNLVHLDLSFNTIKMINKSSLQTKMKTNLSILELHGNYFDCTCD
ISDFRSWLDENLNITIPKLVNVICSNPGDQKSKSIMSLDLTTCVSDTTAAVLFFLTFLTTSMVMLAALVH
HLFYWDVWFIYHMCSAKLKGYRTSSTSQTFYDAYISYDTKDASVTDWVINELRYHLEESEDKSVLLCLEE
RDWDPGLPIIDNLMQSINQSKKTIFVLTKKYAKSWNFKTAFYLALQRLMDENMDVIIFILLEPVLQYSQY
LRLRQRICKSSILQWPNNPKAENLFWQSLKNVVLTENDSRYDDLYIDSIRQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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