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Report for CCDS41124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41124.1 Public Mus musculus X Gla 23 108 98 CCDS HistoryNCBI Gene:11605Re-query CCDS DB by CCDS ID:41124.1Re-query CCDS DB by GeneID:11605See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239113.1 ENSMUSP00000159121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239113.1Link to Ensembl Protein Viewer:ENSMUSP00000159121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239113Re-query CCDS DB by Protein ID:ENSMUSP00000159121
Original member NCBI NM_013463.2 NP_038491.2 Updated not alive Link to Nucleotide Sequence:NM_013463.2Link to Protein Sequence:NP_038491.2Re-query CCDS DB by Nucleotide ID:NM_013463Re-query CCDS DB by Protein ID:NP_038491
Current member NCBI NM_013463.3 NP_038491.2 Accepted alive Link to Nucleotide Sequence:NM_013463.3Link to Protein Sequence:NP_038491.2Re-query CCDS DB by Nucleotide ID:NM_013463Re-query CCDS DB by Protein ID:NP_038491Link to BLAST:NP_038491.2

Chromosomal Locations for CCDS 41124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134589867 134590127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134590946 134591143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134592065 134592226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134593634 134593725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134595180 134595357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134596275 134596449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134600738 134600937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCCATGAAGCTTTTGAGCAGAGATACGCGGCTGGTCTGTGAGCTTGCGCTTTGTCCCCTGGCTTTAG
TTTTCTGGAGCATTCTTGGGGTCAGAGCATTGGACAATGGCTTGGCGCGGACTCCTACTATGGGCTGGCT
GCATTGGGAACGTTTCATGTGCAACCTTGACTGCCAAGAAGAGCCTGATGCCTGCATAAGTGAGCAACTG
TTCATGCAGATGGCAGAGCTCATGGTCTCTGATGGCTGGCGGGATGCAGGTTATGACTATCTCTGCATAG
ATGACTGTTGGATGGCTCCCGAGAGGGATTCAAAGGGCAGGCTTCAGGCAGATCCCCAACGCTTTCCTAG
TGGGATCAAACACCTCGCAAATTACGTCCACAGCAAAGGATTGAAGCTAGGGATTTATGCAGATGTTGGG
AATAAAACCTGTGCAGGTTTCCCCGGGAGTTTTGGATCCTATGACATTGATGCGCAGACATTTGCTGACT
GGGGCGTAGATCTGCTAAAATTTGATGGTTGTCACTGTGACAGTGTAGTATCCTTGGAGAATGGTTATAA
GTACATGGCCTTGGCCTTGAACAGGACAGGCCGAAGCATTGTATACTCCTGTGAGTGGCCACTTTATTTG
AGACCCTTTCATAAGCCCAATTATACAGATATCCAATATTACTGCAATCATTGGAGAAATTTTGATGATG
TTTATGATTCCTGGGAAAGCATAAAGAATATCTTGTCTTGGACAGTGGTTTACCAGAAGGAGATTGTTGA
AGTCGCTGGACCAGGCAGCTGGAATGACCCAGACATGTTAGTGATCGGCAACTTTGGCCTCAGTTGGGAC
CAGCAGGTGACACAGATGGCCCTCTGGGCTATCATGGCCGCTCCCCTACTCATGTCCAACGATCTGCGAC
AAATCAGCTCTCAAGCCAAAGCTCTGCTTCAGAATAAGGATGTAATTGCCATCAACCAAGACCCCTTGGG
CAAGCAGGGCTACTGTTTCAGAAAGGAAAACCACATTGAGGTTTGGGAACGGCCACTCTCCAACCTAGCC
TGGGCTGTGGCTGTGAGAAACCTGCAGGAGATTGGTGGACCTTGTCCTTATACCATCCAGATTTCTTCCC
TGGGTAGAGGACTAGCCTGCAATCCTGGCTGCATCATTACTCAGCTTCTCCCCGAGAAAGTACACCTAGG
CTTCTATGAATGGACTTTGACCTTAAAAACTCGAGTAAACCCCTCAGGCACTGTTTTGTTTCGGTTAGAA
AGATAA

Translation (421 aa):
MAMKLLSRDTRLVCELALCPLALVFWSILGVRALDNGLARTPTMGWLHWERFMCNLDCQEEPDACISEQL
FMQMAELMVSDGWRDAGYDYLCIDDCWMAPERDSKGRLQADPQRFPSGIKHLANYVHSKGLKLGIYADVG
NKTCAGFPGSFGSYDIDAQTFADWGVDLLKFDGCHCDSVVSLENGYKYMALALNRTGRSIVYSCEWPLYL
RPFHKPNYTDIQYYCNHWRNFDDVYDSWESIKNILSWTVVYQKEIVEVAGPGSWNDPDMLVIGNFGLSWD
QQVTQMALWAIMAAPLLMSNDLRQISSQAKALLQNKDVIAINQDPLGKQGYCFRKENHIEVWERPLSNLA
WAVAVRNLQEIGGPCPYTIQISSLGRGLACNPGCIITQLLPEKVHLGFYEWTLTLKTRVNPSGTVLFRLE
R


Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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