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Report for CCDS41121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41121.1 Public Mus musculus X Trmt2b 23 108 98 CCDS HistoryNCBI Gene:215201Re-query CCDS DB by CCDS ID:41121.1Re-query CCDS DB by GeneID:215201See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087541.11 ENSMUSP00000084820.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087541.11Link to Ensembl Protein Viewer:ENSMUSP00000084820.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087541Re-query CCDS DB by Protein ID:ENSMUSP00000084820
Original member Current member EBI ENSMUST00000113252.7 ENSMUSP00000108878.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113252.7Link to Ensembl Protein Viewer:ENSMUSP00000108878.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113252Re-query CCDS DB by Protein ID:ENSMUSP00000108878
Original member Current member NCBI NM_001167994.1 NP_001161466.1 Accepted alive Link to Nucleotide Sequence:NM_001167994.1Link to Protein Sequence:NP_001161466.1Re-query CCDS DB by Nucleotide ID:NM_001167994Re-query CCDS DB by Protein ID:NP_001161466Link to BLAST:NP_001161466.1
Original member Current member NCBI NM_172540.2 NP_766128.2 Accepted alive Link to Nucleotide Sequence:NM_172540.2Link to Protein Sequence:NP_766128.2Re-query CCDS DB by Nucleotide ID:NM_172540Re-query CCDS DB by Protein ID:NP_766128Link to BLAST:NP_766128.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161466.1 493 Q8BQJ6 493 100% 0 0
NP_766128.2 493 Q8BQJ6 493 100% 0 0

Chromosomal Locations for CCDS 41121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134224579 134224705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134238143 134238242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134238467 134238586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134240079 134240180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134240355 134240569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134240977 134241071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134243015 134243161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134261577 134261647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134262785 134262884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134263727 134263861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134266261 134266315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134267331 134267545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCACAACCCAAGACTATTCCTTTCCAGAGCGGGTTTCTTCTCCAAACCAGGACTGCTTCCCTGGGATA
CTGGAAGACCACCAGATTTGTCACAGTCCTTATTGGGCAGAGCATATAAAGGGAGTTTCACCAGCGTGAT
AGCTAAGAAGCACCCAAGCAGACAAAAATATCAGAAGAAACAAAGGCATTGTAGAGATGACTCCTGGCAG
GAGAGGCTGGCTGATGTTGTGACTCCACTCTGGAGGCTGAGTTATGAAGCACAACTCAAGGTGAAATTTG
AAGCTCAGAAGAAACTTTTACAAAGCCTAGAGTCTCACCTAAAAGTGCTCCATGGAGTCAGTGACACAGT
GGCTGCACATCAGTCTGAGGGGCTCCGCTGTCTCCTCCATCCCATTATACCCTCTCCTACCACCACTGGC
TACCGGAACAAGTCCACCTTTTCTGTGTACAGGAGCCCAGATGGCAATCCAAAGACTGTGGGCTACTACC
TAGGAACTTGGAAAGATGGAAATGTCGTCTGTCTACCATGTAATCATCTGAAAAACATCCCAGAGAAACA
CAGTCAAGTGGCTCAGTACTATGAAGTATTCCTTCGACAGTCTTCAGTGGAACCCTGCCTTCTCTTTCAT
GAAGGTGGACACTGGCGTGAACTCGTAGTTCGTACCAATAGGCAAGGACACACAATGGCTATTGTCACTT
TTCATCCCCAGGGATTAAGTGAGGAGGAGGTCTGTGTTCAGAAGGTGACCTTGAAGGATTTTTTCACTAA
AGGCCCTGGAGCGATCTGTGAATTGACCTCGCTCTATTTCCAGGAAAGCACCATGACCCGTTGCAGCCAT
CAGCAGTCCCCCTACCAGCTCCTGTTTGGGGAGCCCCACATCTTTGAGGATCTTCTGGGTTTGAAGATTC
GAATTTCTCCAGATGCCTTCTTCCAGATTAATACTGCTGGGGCAGAGATGCTGTATCGGATCATTGGGGA
GCTGAGTGGAGTGAACTCTGAGAGCCTCCTCCTAGACATTTGCTGTGGCACGGGTGTGATTGGCCTCTCT
GTGGCTCAGCGTGCCTCCCAGGTTCATGGCATTGAGCTAGTGGAGCAGGCAGTAGAGGATGCCAGGTGGA
CTGCAGCCTTCAATGGTGTCACCAACTGTGAGTTTCACGCTGGCAGAGCAGAGACGATTTTGCCACAGCT
GTTAAAGTCACAGAAAGATGAGAAGTTGACTGTTGCTGTGGTGAACCCTGCCCGAGCTGGATTGCATTAC
AGAGTGGTGCGAGCCATTCGGAACTGCAGGACCATCCACACTCTAGTGTTTGTTTCCTGCAAGCCCCATG
GTGAAAGCACAAGGAACTTCATTGAACTATGCTGTCCTCCAAATTCTGCAAAGCAGCTCCTAGGTGATCC
ATTCGTCCTGAGAGAAGCTGTACCTGTGGATTTGTTTCCCCACACCCCACACTGTGAGCTGGTTCTCCTC
TTCACTCGGTAA

Translation (493 aa):
MHNPRLFLSRAGFFSKPGLLPWDTGRPPDLSQSLLGRAYKGSFTSVIAKKHPSRQKYQKKQRHCRDDSWQ
ERLADVVTPLWRLSYEAQLKVKFEAQKKLLQSLESHLKVLHGVSDTVAAHQSEGLRCLLHPIIPSPTTTG
YRNKSTFSVYRSPDGNPKTVGYYLGTWKDGNVVCLPCNHLKNIPEKHSQVAQYYEVFLRQSSVEPCLLFH
EGGHWRELVVRTNRQGHTMAIVTFHPQGLSEEEVCVQKVTLKDFFTKGPGAICELTSLYFQESTMTRCSH
QQSPYQLLFGEPHIFEDLLGLKIRISPDAFFQINTAGAEMLYRIIGELSGVNSESLLLDICCGTGVIGLS
VAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKLTVAVVNPARAGLHY
RVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPVDLFPHTPHCELVLL
FTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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