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Report for CCDS41101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41101.1 Public Mus musculus X Hmgn5 23 108 98 CCDS HistoryNCBI Gene:50887Re-query CCDS DB by CCDS ID:41101.1Re-query CCDS DB by GeneID:50887See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033597.8 ENSMUSP00000033597.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033597.8Link to Ensembl Protein Viewer:ENSMUSP00000033597.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033597Re-query CCDS DB by Protein ID:ENSMUSP00000033597
Original member Current member NCBI NM_016710.2 NP_057919.2 Accepted alive Link to Nucleotide Sequence:NM_016710.2Link to Protein Sequence:NP_057919.2Re-query CCDS DB by Nucleotide ID:NM_016710Re-query CCDS DB by Protein ID:NP_057919Link to BLAST:NP_057919.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057919.2 406 Q9JL35 406 100% 0 0

Chromosomal Locations for CCDS 41101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 109005109 109006071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109008162 109008296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109010554 109010607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109010857 109010886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109011422 109011445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 109013252 109013266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGCCCAAAAGAAAGGCTGCAGGTGATGTGAGCCAGGAGCCAAAGAGAAGATCAGCCCGACTGTCTGCTA
TGCCTGTGCCCTTTACACCGGAGTTGAAACCTAAAAGAGCATCAACTTCAAGGAAAACCAAGACCACAAA
TGTCGTGGAAGAAAACAAAGATGCAAGTACCATACCAATTCCTGAAACCAAGCCAGAAGATGTTAAAGAC
GAATGCAACATGGAAAATGCTGAAAATGGAGAAGCCAAGATTATGGAGGCACCCATTCCTAAAATGGAAG
CTGAGGAAGTAAAAGAACAGATAAATGAAGACACTGAAGAAGATGGAGGAGAAAAGAAAGAAGCAGTGGC
AGCAGAAGCCAAAGATGATGAGCTAAAAGCAAACATTCAAGATGTGGAGAAAGATGAAGATGGAAAAGAG
CACAAAGATACAGGTGAGGAGGTGGAAGACGGAAAAATAGAAGAAGAAGGCCTAAACGAGAAACCAGGTA
CAGCCAAAAGTGAAGATGCAGAGGTGTCCAAAGATGAAGAAGAGAAAGGAGACAATGAAAAAGGAGAAGA
TGGCAAAGAAGAAGGTGATGAGAAGGAAGAAGAGAAAGATGACAAAGAGGGGGACACTGGAACAGAAAAA
GAAGTAAAAGAACAAAACAAGGAAGCCGAGGAGGATGATGGGAAATGCAAAGAGGAGGAAAACAAGGAAG
TTGGAAAGGAAGGTCAGCCTGAGGAAGATGGAAAGGAAGATCTGCATGAGGAAGTTGGAAAGGAAGATCT
GCATGAGGAAGATGGAAAGGAAGGTCAGCCTGAGGAAGATGGGAAGGAAATTCATCATGAGGAAGATGGA
AAGGAAGGTCAGCCTGAAGAAGATGGAAAGGAATATCTGCATGAGGAAGATGGAGAGGAAGGTCAGCCTA
AGGAAGATCAAAAGGAAGGTCAGCCTGAGGAAGATGGAAAGGAAGATCAGCCTGAGGAAGATGGAAAGGA
AGGTCAGTGTAAGGAAGATGGGAAGGAAGGTCATCATGAGGAAGGTGGAAAGGAAGATCTGCATGAGGAA
GATGGAAAGGAGAAAGATGGTGGAAAAGAGGATAGAAAGGAAGAAGGAGAGCAAGAGGTTGCTGTAGATG
AAGGGAGTGATGAAAACAAGGTGGAGGCAGAAGAAGAAGGAGCCGAAAACAAAGACTTCAAACAAGACGG
AGAGAAAGAGGAGCCTCTGAGTATTGTCTAA

Translation (406 aa):
MPKRKAAGDVSQEPKRRSARLSAMPVPFTPELKPKRASTSRKTKTTNVVEENKDASTIPIPETKPEDVKD
ECNMENAENGEAKIMEAPIPKMEAEEVKEQINEDTEEDGGEKKEAVAAEAKDDELKANIQDVEKDEDGKE
HKDTGEEVEDGKIEEEGLNEKPGTAKSEDAEVSKDEEEKGDNEKGEDGKEEGDEKEEEKDDKEGDTGTEK
EVKEQNKEAEEDDGKCKEEENKEVGKEGQPEEDGKEDLHEEVGKEDLHEEDGKEGQPEEDGKEIHHEEDG
KEGQPEEDGKEYLHEEDGEEGQPKEDQKEGQPEEDGKEDQPEEDGKEGQCKEDGKEGHHEEGGKEDLHEE
DGKEKDGGKEDRKEEGEQEVAVDEGSDENKVEAEEEGAENKDFKQDGEKEEPLSIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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