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Report for CCDS41067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41067.1 Public Mus musculus X Amer1 23 108 98 CCDS HistoryNCBI Gene:72345Re-query CCDS DB by CCDS ID:41067.1Re-query CCDS DB by GeneID:72345See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084535.5 ENSMUSP00000109502.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084535.5Link to Ensembl Protein Viewer:ENSMUSP00000109502.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084535Re-query CCDS DB by Protein ID:ENSMUSP00000109502
Original member Current member NCBI NM_175179.4 NP_780388.2 Accepted alive Link to Nucleotide Sequence:NM_175179.4Link to Protein Sequence:NP_780388.2Re-query CCDS DB by Nucleotide ID:NM_175179Re-query CCDS DB by Protein ID:NP_780388Link to BLAST:NP_780388.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780388.2 1132 Q7TS75 1132 100% 0 0

Chromosomal Locations for CCDS 41067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 95425112 95428510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3399 nt):
ATGGAGAGTCAACAGGATGAAGCTGTTCAAACCAAAGGAGCATCAACTTCTAGCGATGCCCAAGACCAGG
GAGCTGAAAAGGGAGCCAAGAATAAGACAACTGAGGCAACAGAAGGACCAACATCAGAGCCTCCCTTATC
AGGCCCAGGTAGGCTGAAGAAAACTGCCATGAAACTCTTTGGTGGCAAGAAGGGAATCTGTACTCTGCCT
AGTTTCTTTGGGGGTGGACGAAGCAAAGGTTCTGGGAAAGTCAGCTCTAAGAAAAGTCTAAACAAGAGTA
AGACTCACGATGGTCTAAGTGAAGCGTCTCAGGGACCTGAAGATGTTGTCATTGAAGAAACAGACCTCTC
TACACCTTTGTCCAAGTCATCTGCTCAATTTCCTAGCTCCCAGAGTGCCAATGGAGCGTTGGAGATAGGC
TCTAAACATAAGACATCTGGGACTGAAGCCATAGAAAAAGCTGGAGTTGAGAAGGTACCCTCTGTGCACA
AGCCGAAGAAAAGCCTAAAAAGCTTCTTTAGCAGTATCCGCCGTCACCGGAAGGGCAAGACTTCTGGGGC
TGACCAAAGTGTGCCAGGGGCCAAGGAACTTGAGGGGGCAAGAACCAGGTCTCATGAGCATGTGAGTTCA
ATCTCTCTGCCCAGCTCTGAGGAGATATTCCGAGACACTAGAAAGGAAAATGCCAAACCCCAGGATGCCC
CTGGACCAAAAATGTCTCCAGCACAAGTACATTTTTCACCAACTACTGAGAAGGCAGCTTGTAAAAATCC
AGAAAAACTCACAAGGACCTGTGCCTCAGAGTTCATGCAGCCCAAGCCTGTTCTTGAAGGTGGTAGTCTA
GAGGAGCCCCACACTTCAGAAACAGAAGGAAAAGTGGTGGCAGGAGAAGTAAACCCACCCAATGGCCCTG
TTGGGGATCAGCTAAGCCTCTTGTTTGGGGATGTTACATCGCTAAAAAGCTTTGACTCACTGACAGGTTG
TGGTGACATTATAGCAGAACAGGACATGGACAGCATGACAGATAGCATGGCCTCTGGTGGCCAGAGGGCC
AACCGAGATGGGACCAAGCGAAGTTCCTGCTTGGTAACCTACCAAGGAGGTGGGGAGGAGATGGCCTTGC
CAGATGATGATGACAATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTATTAGAGGATGAAGAGGAGGTTAAGGATGGA
GAGGAAAATGATGACTTAGAGTATCTGTGGGCAAGTGCCCAGATATACCCAAGATTTAATATGAATCTGG
GCTACCATACTGCTATATCTCCCAGCCACCAGGGCTACATGCTTCTTGACCCAGTTCAGTCTTATCCTAA
TCTAGGCCTTGGAGAACTTTTGACACCTCAGAGCGACCAGCAAGAGTCTGCTCCCAATAGTGATGAAGGT
TATTATGACTCTACCACACCAGGATTTGAGGATGATTCAGGTGAGGCTCTGGGACTTGCCCACAGGGATT
GTCTACCCAGGGACAGCTATAGTGGTGATGCGCTATATGAGTTCTATGAGCCAGATGACAGTCTTGAGCA
CTCCCCACCTGGGGATGACTGCCTATATGACCTCCGTGGACGCAACTCAGAGATGTTGGATCCTTTCTTG
AACTTGGAGCCCTTTTCTTCTCGGCCACCTGGGGCAATGGAAACCGAGGAAGAACGGCTAGTGACCATCC
AGAAGCAGTTGCTATACTGGGAACTTCGCCGGGAGCAGCGTGAGGCTCAAGAGGCATGTGCCAGAGAGGC
TCATGCCAGAGAAGCTTATGCCCGAGACACCCATACTCGGGAATCTTATGGCAGAAATGTCCGAGCCCGA
GAAACTCAGGCCTTAGAGGCTCATTCTCAAGAGGGTCGAGTCCAAGAGACCAAGGTACGGCAGGAGAAGC
CTGCCTTGGAGTATCAGATGAGGCCCTTAGGTCCCTCAGTGATGGGTCTGGTGGCAGGGACATCAGGAGG
TTCTCAGACTTCTCACCGGGGAACCACTTCAGCTTTCCCTGCTACTTCTAGCAGTGAGCCAGACTGGAGG
GATTTCCGTCCTCTGGAGAAGCGTTTTGAGGGGACTTGTTCCAAAAAAGATCAAAGTACTTGTTTAATGC
AGCTCTTCCAGAGTGATGCCATGTTTGAGCCAGACATGCAAGAAGCAAATTTTGGAGGCTCACCCAGGAA
GGCGTACCCTAGTTACTCACCCCCTGAGGAGCCAGAGGAAGAAGAAGAGGAGAAGGAAGGGAATGCCACT
GTGAGTTTCTCACAGGCCCTAGTAGAGTTCACCAGCAATGGAAACCTTTTTACCAGCATGTCCTACAGCT
CTGATTCTGACTCATCCTTCACTCAAAACCTCCCTGAGCTGCCCCCCATGGTCACCTTTGATATTGCTGA
CGTGGAACGAGATGGAGAAGGCAAGTGTGAAGAGAATCCTGAGTTCAACAATGACGAAGATCTTACAGCC
TCCTTGGAAGCTTTTGAGCTGGGTTATTACCACAAACATGCCTTCAACAGCTATCACAGTCGGTTCTACC
AAGGCCTGCCCTGGGGAGTTAGCAGCCTCCCTCGATACTTAGGACTCCCCGGAGTCCACCCTCGACCTCC
TCCTGCTGCAATGGCACTCAATAGGAGAAGCCGTTCCCTTGACAATGCAGAGTCTCTGGAGCTGGAGCTC
TCCAGTTCTCACCTAGCCCAGGGTTACATGGAGTCTGATGAGCTCCAGGCCCACCAGGAAGATTCAGATG
AAGAAGGTGAAGAAGAGGAAGGAGAATGGGGTCGGGATAGTCCCTTGTCTCTCTACACTGAACCTCCAGG
GGTCTATGACTGGCCTCCCTGGGCTCACTGTCCTCTTCCAGTGGGGCCAGGTCTTGCTTGGATGAGCCCT
AATCAGTTGTATGAGCCTTTCAATCAGTCTTCCTATGTGCAGGCAACCTGTTGTGTACCTCCTGTGGCAA
TGCCAGTGTCAGTGCCAGGAAGAACACCTGGAGACTCTGTGTCTCAGCTAGCTCGACCTTCGCACCTACC
CCTGCCCATGGGCCCTTGCTATAACCTTCAATCACAGGCCTCCCAGAGTGGGAGGGCCAAGCCTCGGGAT
GTACTGCTGCCTGTAGATGAGCCCAGTTGCTCTTCCATTTCTGGAGCCAACTCTCAGTCTCAAGCCAAGC
CTGTAGGTATCACCCATGGTATCCCTCAGCTGCCCAGGGTGCGGCCTGAACCCTTCCAGCTTCAACCCAA
TCACTATCGAGCTTCCAACCTTGACCTGTCAAAGGAGAGGGGTGAGCAAGGTGCCTCTCTCTCTACCAGC
TACTCCTCTACTGCCATGAATGGAAACCTAGCCAAGTAG

Translation (1132 aa):
MESQQDEAVQTKGASTSSDAQDQGAEKGAKNKTTEATEGPTSEPPLSGPGRLKKTAMKLFGGKKGICTLP
SFFGGGRSKGSGKVSSKKSLNKSKTHDGLSEASQGPEDVVIEETDLSTPLSKSSAQFPSSQSANGALEIG
SKHKTSGTEAIEKAGVEKVPSVHKPKKSLKSFFSSIRRHRKGKTSGADQSVPGAKELEGARTRSHEHVSS
ISLPSSEEIFRDTRKENAKPQDAPGPKMSPAQVHFSPTTEKAACKNPEKLTRTCASEFMQPKPVLEGGSL
EEPHTSETEGKVVAGEVNPPNGPVGDQLSLLFGDVTSLKSFDSLTGCGDIIAEQDMDSMTDSMASGGQRA
NRDGTKRSSCLVTYQGGGEEMALPDDDDNDDEEEEEEEEEEEEEEEEEEEEEEEEEEEELLEDEEEVKDG
EENDDLEYLWASAQIYPRFNMNLGYHTAISPSHQGYMLLDPVQSYPNLGLGELLTPQSDQQESAPNSDEG
YYDSTTPGFEDDSGEALGLAHRDCLPRDSYSGDALYEFYEPDDSLEHSPPGDDCLYDLRGRNSEMLDPFL
NLEPFSSRPPGAMETEEERLVTIQKQLLYWELRREQREAQEACAREAHAREAYARDTHTRESYGRNVRAR
ETQALEAHSQEGRVQETKVRQEKPALEYQMRPLGPSVMGLVAGTSGGSQTSHRGTTSAFPATSSSEPDWR
DFRPLEKRFEGTCSKKDQSTCLMQLFQSDAMFEPDMQEANFGGSPRKAYPSYSPPEEPEEEEEEKEGNAT
VSFSQALVEFTSNGNLFTSMSYSSDSDSSFTQNLPELPPMVTFDIADVERDGEGKCEENPEFNNDEDLTA
SLEAFELGYYHKHAFNSYHSRFYQGLPWGVSSLPRYLGLPGVHPRPPPAAMALNRRSRSLDNAESLELEL
SSSHLAQGYMESDELQAHQEDSDEEGEEEEGEWGRDSPLSLYTEPPGVYDWPPWAHCPLPVGPGLAWMSP
NQLYEPFNQSSYVQATCCVPPVAMPVSVPGRTPGDSVSQLARPSHLPLPMGPCYNLQSQASQSGRAKPRD
VLLPVDEPSCSSISGANSQSQAKPVGITHGIPQLPRVRPEPFQLQPNHYRASNLDLSKERGEQGASLSTS
YSSTAMNGNLAK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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