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Report for CCDS40984.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40984.2 Reviewed, update pending Mus musculus X Arhgef6 23 108 98 CCDS HistoryNCBI Gene:73341Re-query CCDS DB by CCDS ID:40984.2Re-query CCDS DB by GeneID:73341See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 40984.1
The coding region has been updated to extend the N-terminus to one that is also supported by available conservation data. The use of an alternative upstream would result in a protein that is 24 aa longer, and this 5'-CDS extension is also well conserved.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 40984.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033468.10 ENSMUSP00000033468.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033468.10Link to Ensembl Protein Viewer:ENSMUSP00000033468.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033468Re-query CCDS DB by Protein ID:ENSMUSP00000033468
Original member NCBI NM_152801.2 NP_690014.2 Updated not alive Link to Nucleotide Sequence:NM_152801.2Link to Protein Sequence:NP_690014.2Re-query CCDS DB by Nucleotide ID:NM_152801Re-query CCDS DB by Protein ID:NP_690014
Current member NCBI NM_152801.3 NP_690014.3 Pending alive Link to Nucleotide Sequence:NM_152801.3Link to Protein Sequence:NP_690014.3Re-query CCDS DB by Nucleotide ID:NM_152801Re-query CCDS DB by Protein ID:NP_690014Link to BLAST:NP_690014.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690014.3 771 Q8K4I3 771 100% 0 0

Chromosomal Locations for CCDS 40984.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 57233511 57233651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57234857 57234911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57236986 57237085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57239166 57239243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57240594 57240687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57241806 57241826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57243390 57243515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57244605 57244750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57245552 57245630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57246387 57246473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57248963 57249109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57251290 57251349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57256121 57256259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57273895 57274017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57275878 57275973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57280212 57280306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57289221 57289291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57299460 57299661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57302310 57302431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57304566 57304650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57336952 57337035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57338338 57338574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGCAATCACGGATGTGGCTTAGTCTTCACAGCTGCCCCGAGAGCTGTTCAGAGCGTCCGAGAGCCTCAG
TCATGAATCCAGAAGAACGCCTTGTGACATGGCTTATATCTTTGGGAGTTCTAGAGTCTCCCAAAAAGAC
TGTCTGTGATCCAGAGGAGTTCTTGAAGTCCTCGCTGAAAAATGGGGTAGTGTTGTGCAAACTCATAAAC
AGACTTCTGCCTGGCTCGGTGGAGAAGTATTGTCTGGAACCCCAAACTGAGGCCGACTGCATCGACAACA
TCAATGACTTCCTGAAAGGATGTGCAACTCTTCAAGTGGAAGTGTTTGAGCCTGATGACCTCTATTCGGG
GGCCAATTTCTCCAAGGTTCTGAATACTCTTTTAGCTGTCAACAAAGCAACTGAAGATCAGCTCTCAGAA
AGACCATGTGGAAGGTCCTCTTCTCTTAGTGCTGCGACCAGCTCTCAGACAAACCCGCAGGTGGCCGTTC
CCAGCACAGCTCCAGAGCAGCACAGCGAGGAAAAGGCAGAGATGACGGAAAATGGAAGTCACCAGTTGAT
AGTAAAGGCAAGATTCAACTTCAAGCAGACGAATGAAGATGAATTGTCAGTGTGTAAAGGGGACATCATT
TATGTCACACGAGTTGAAGAAGGAGGCTGGTGGGAAGGCACATTAAATGGGAGAACTGGATGGTTCCCTA
GTAATTATGTCCGAGAAATTAAACCCAGTGAGAGACCTCTGTCCCCTAAGGCTATCAAAGGATTTGACAC
TGCTCCACTTACCAAGAATTACTACACTGTGGTGTTACAGAACATCTTGGACACTGAAAAAGAATATGCC
AAAGAACTTCAGTCTCTTCTTGTTACTTACCTAAGACCCTTGCAGTCTAATAACAACCTGAGTACTGTGG
AGTTTACATGTTTATTGGGAAACTTTGAAGAAGTATGCACATTTCAACAGACACTCTGCCAAGCCTTGGA
AGAATGTTCAAAGTTTCCAGAAAACCAACACAAAGTAGGAGGCTGCCTACTGAACCTCATGCCTCATTTC
AAATCGATGTACCTGGCTTACTGTGCAAATCATCCATCAGCTGTCAACGTGCTCACCCAGCACAGTGATG
ATCTAGAACGATTCATGGAAAATCAAGGTGCATCCAGCCCGGGTATCCTCATTCTAACAACAAGTCTCAG
CAAACCATTCATGCGACTGGAAAAGTATGTTACTCTCTTGCAAGAACTGGAACGACATATGGAGGACACT
CATCCAGACCATCAGGATATTCTGAAAGCAATCATAGCATTCAAAACACTCATGGGGCAGTGTCAAGATC
TGAGAAAGAGAAAGCAGCTGGAATTGCAGATCCTTTCAGAACCTATTCAGGCATGGGAAGGAGATGATAT
TAAGACTTTGGGAAATGTGATCTTTATGTCTCAAGTAGTGATGCAGCATGGGGCCTGTGAGGAGAAAGAG
GAACGATATTTTCTGCTGTTTTCAAGTGTCTTGATAATGTTGTCTGCAAGTCCTCGGATGAGTGGCTTTA
TGTATCAGGGAAAAATACCAATAGCAGGGATGGTAGTGAACAGATTGGATGAAATTGAAGGCAGTGACTG
TATGTTCGAAATCACAGGTAGCACGGTTGAGAGAATTGTGGTCCATTGCAACAATAACCAGGACTTCCAG
GAGTGGATGGAGCAGCTGAACAGACTGACCAAAGGACCAACCTCTTGCGGTTCATTGTCTAAGACCTCCT
CCTCATCATGTAGTACTCATTCTTCTTTTAGCTCTACCGGACAGCCCCGAGGACCCTTGGAGCCTCCTCA
AATTATAAAACCGTGGAGTTTAAGTTGCCTACGACCTGCACCTCCACTTAGACCATCAGCAGCACTAGGT
TATAAAGAGAGGATGTCTTATATCTTAAAGGAATCTAGTAAGAGCCCCAAAACAATGAAGAAGTTTCTTC
ACAAAAGAAAGACGGAGAGGAAAGCATCCGAGGAAGAATACGTGATTAGGAAAAGTACTGCTGCCCTGGA
AGAGGATGCTCAGATTCTTAAGGTGATCGAAGCTTATTGCACCAGCGCCAGTTTTCAACAAGGTACTCGT
AAAGATTCTGTTCCACAAGTTCTACTCCCCGAGGAAGAGAAACTCATTATTGAAGAAACCAGAAGTAATG
GGCAGACCATCATTGAAGAGAAGAGCCTTGTTGATACTGTCTATGCCTTGAAGGATGAGGTCAAGGAACT
GAAGCAGGAGAATAAAAAAATGAAGCAATGTCTGGAAGAAGAATTGAAGTCGAGGAAGGACCTAGAGAAG
CTGGTCCGGAAGCTGTTGAAACAAACAGATGAATGCATTCGATCTGAATCCAGCAGCAAGACCTCGATTC
TCCAGTAA

Translation (795 aa):
MQSRMWLSLHSCPESCSERPRASVMNPEERLVTWLISLGVLESPKKTVCDPEEFLKSSLKNGVVLCKLIN
RLLPGSVEKYCLEPQTEADCIDNINDFLKGCATLQVEVFEPDDLYSGANFSKVLNTLLAVNKATEDQLSE
RPCGRSSSLSAATSSQTNPQVAVPSTAPEQHSEEKAEMTENGSHQLIVKARFNFKQTNEDELSVCKGDII
YVTRVEEGGWWEGTLNGRTGWFPSNYVREIKPSERPLSPKAIKGFDTAPLTKNYYTVVLQNILDTEKEYA
KELQSLLVTYLRPLQSNNNLSTVEFTCLLGNFEEVCTFQQTLCQALEECSKFPENQHKVGGCLLNLMPHF
KSMYLAYCANHPSAVNVLTQHSDDLERFMENQGASSPGILILTTSLSKPFMRLEKYVTLLQELERHMEDT
HPDHQDILKAIIAFKTLMGQCQDLRKRKQLELQILSEPIQAWEGDDIKTLGNVIFMSQVVMQHGACEEKE
ERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQ
EWMEQLNRLTKGPTSCGSLSKTSSSSCSTHSSFSSTGQPRGPLEPPQIIKPWSLSCLRPAPPLRPSAALG
YKERMSYILKESSKSPKTMKKFLHKRKTERKASEEEYVIRKSTAALEEDAQILKVIEAYCTSASFQQGTR
KDSVPQVLLPEEEKLIIEETRSNGQTIIEEKSLVDTVYALKDEVKELKQENKKMKQCLEEELKSRKDLEK
LVRKLLKQTDECIRSESSSKTSILQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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