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Report for CCDS40892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40892.1 Public Mus musculus X Wdr44 23 108 98 CCDS HistoryNCBI Gene:72404Re-query CCDS DB by CCDS ID:40892.1Re-query CCDS DB by GeneID:72404See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035766.12 ENSMUSP00000044616.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035766.12Link to Ensembl Protein Viewer:ENSMUSP00000044616.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035766Re-query CCDS DB by Protein ID:ENSMUSP00000044616
Original member Current member EBI ENSMUST00000101670.2 ENSMUSP00000099193.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101670.2Link to Ensembl Protein Viewer:ENSMUSP00000099193.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101670Re-query CCDS DB by Protein ID:ENSMUSP00000099193
Original member Current member NCBI NM_001305675.1 NP_001292604.1 Accepted alive Link to Nucleotide Sequence:NM_001305675.1Link to Protein Sequence:NP_001292604.1Re-query CCDS DB by Nucleotide ID:NM_001305675Re-query CCDS DB by Protein ID:NP_001292604Link to BLAST:NP_001292604.1
Original member Current member NCBI NM_175180.3 NP_780389.2 Accepted alive Link to Nucleotide Sequence:NM_175180.3Link to Protein Sequence:NP_780389.2Re-query CCDS DB by Nucleotide ID:NM_175180Re-query CCDS DB by Protein ID:NP_780389Link to BLAST:NP_780389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292604.1 915 Q6NVE8-1 915 100% 0 0
NP_780389.2 915 Q6NVE8-1 915 100% 0 0

Chromosomal Locations for CCDS 40892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 23693463 23693539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23732318 23732351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23749906 23749980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23756440 23757085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23758095 23758225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23759183 23759278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23761404 23761540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23762277 23762360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23769890 23769996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23778624 23778775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23780803 23780941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23783288 23783352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23788052 23788165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23795984 23796106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23800370 23800561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23800734 23800835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23801040 23801155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23802315 23802442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23803769 23803903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23804889 23804983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2748 nt):
ATGGCGTCGGAAAGCGACACCGAAGAATTCTATGATGCCCCTGAAGATGTGCACCTGGGGACCGGCTATC
CTGTAGGGTCTCCAGGAAAAGTTGGACTTTTATCATTTAAGGAAGCCGAGAATACAGCAAACCAAGCTGG
AAATGAGTCCCCTGTACAAGAATTGAGACAAGATGTATCTAAAAAGATAATTGAAAGTATTATTGAGGAA
AGTCAGAAAGTACTACAATTGGAAGATGACTCTTTGGACTCCAAAGGAAAAGGACTTTCTGATGAGGCTA
CTGCAGGTCCTTCTGTGGCTGGGACAGAGTTTAGTAACATACCTGGACTATTAGCCATAGAGCATGAACT
ACAACAAGATTCCGAAAAGGCAGAAAGTCAGAATGTAGCTGAAGAAAGTGAACTAGAAACACAAAAATGT
TTTCCTTCTGATGAGACCTGTGAGAAAAGTGAGAAGACAGTAGATGAGACTGATAATTTAACTGAAGTAA
GTTCAGGTGAGCAGCTTGATGCTTCTGGACTAGAAGCTGAAACACTGAACAAGGAAGCATTGGAAGTCAA
AGAAGGTGATGTTCTAGATCCTGCCTCCTTGGACACTTTATCTACTACAGATTTTGCTGCTGTGGAAGAA
GTGGCTCCTGCCAAACCCCCAAGGCACCTTACTCCAGAACCTGATATAGTAGCCAGTACAAAGAAGCCTG
TTCCTGCGCGCCCACCCCCACCAACTAATTTCCCGCCTCCTAGACCCCCACCTCCATCTCGACCTGCACC
ACCACCAAGAAAAAAGAAAAGCGAACTGGAGTTTGAGGCTCTTAAAACACCTGATCTGGATGTACCCAAA
GAAAATATTACATCTGATTCTCTGCTAACTACAAATATGGCTTCAGAGAATACAGTTAGAGATTCCCTGC
CTTCCCTCGATTTAGCAAGTGCTACCAGTGGAGATAAAATAGTAACTGCCCAGGAAAATGGAAAAGCACC
TGATGTGCAGACAGTAGCAGGTGAAGTGATGGGCCCTCAGAGACCTAGATCCAACTCTGGGAGAGAGCTT
ACTGATGAGGAAATTTTAGCCAGTGTCATGATTAAGAACCTGGATACTGGAGAAGAAATACCTTTAAGTC
TTGCTGAAGAGAAGTTGCCAACAGGTATTAATCCTCTCACTCTGCACATCATGAGAAGGACAAAGGAATA
TGTAAGCAATGATGCCACACAGTCAGATGATGAAGAAAAGTTACAGTCACAACAAACAGATACTGATGGT
GGAAGGTTAAAACAGAAAACGACTCAACTAAAGAAATTCCTTGGAAAATCAGTGAAGAGAGCAAAGCATC
TTGCTGAGGAATATGGTGAACGTGCTATAAATAAAGTTAAAAGCGTAAGAGATGAAGTGTTTCATACTGA
TCAAGATGACCCTTCATCAAGTGACGATGAAGGAATGCCATATACAAGACCAGTAAAATTCAAGGCAGCA
CATGGTTTCAAAGGACCTTATGATTTTGATCAGATCAAAGTGGTGCAAGATCTTAGTGGTGAACACATGG
GAGCTGTTTGGACCATGAAGTTTTCTCACTGTGGCCGACTGCTTGCTTCAGCTGGACAAGACAACATAGT
GAGAATATGGGCTTTAAAAAATGCTTTTGACTATTTCAACAATATGCGAATGAAATACAATACTGAAGGA
CGCGTGTCACCTTCACCATCTCAGGAAAGTCTAAGTTCATCAAAATCTGACACAGACATGGGGGTATGTA
GCGGAACTGACGAAGACCCAGATGACAAAAATGCACCGTTTCGGCAGCGACCATTTTGCAAATATAAAGG
ACATACTGCTGATCTCCTTGATCTTTCATGGTCTAAAAACTACTTTCTGCTCTCTTCTTCTATGGATAAA
ACAGTCAGGTTATGGCACATTTCTAGAAGAGAATGCCTTTGCTGTTTTCAACATATAGATTTTGTCACTG
CCATCGCTTTCCATCCAAGAGATGACAGATATTTTCTCAGTGGATCATTGGATGGAAAGCTCCGCCTATG
GAACATACCTGACAAAAAGGTGGCTTTATGGAATGAAGTAGATGGTCAGACAAAGTTGATCACAGCTGCC
AATTTTTGTCAGAATGGCAAATATGCAGTAATTGGGACATATGATGGTAGATGTATTTTCTATGATACAG
AGCATTTGAAATACCATACACAAATACATGTACGATCTACTAGAGGACGCAACAAGGTTGGAAGAAAAAT
TACTGGCATTGAACCTTTACCTGGAGAAAATAAGATACTGGTAACCTCAAATGACTCCAGAATCAGACTG
TATGATCTGAGAGACCTATCACTGTCCATGAAGTATAAGGGTTATGTCAATAGCAGCAGCCAGATCAAAG
CAAGTTTCAGTCATGACTTTACTTACCTCGTTAGCGGTTCAGAAGATAAATATGTTTATATCTGGAGTAC
GTACCATGACCTAAGCAAGTTTACTTCAGTCAGGAGAGATCGTAATGACTTCTGGGAAGGTATTAAAGCA
CATAATGCAGTTGTTACGTCAGCCATCTTTGCTCCAAACCCAAGTTTGATGCTATCCTTGGATGTGCAAT
CTGAAAAATTAGAAGGGATTGATAAATATGAAGATGCTGAAGTTTTGGATAGCACATCTACTGGTATTGT
GAAGACAGATAACACAGAAGTTCTTCTTTCTGCTGATTTTACTGGAGCAATCAAAGTGTTTATTAACAAA
AGGAAAACTGTATCTTAA

Translation (915 aa):
MASESDTEEFYDAPEDVHLGTGYPVGSPGKVGLLSFKEAENTANQAGNESPVQELRQDVSKKIIESIIEE
SQKVLQLEDDSLDSKGKGLSDEATAGPSVAGTEFSNIPGLLAIEHELQQDSEKAESQNVAEESELETQKC
FPSDETCEKSEKTVDETDNLTEVSSGEQLDASGLEAETLNKEALEVKEGDVLDPASLDTLSTTDFAAVEE
VAPAKPPRHLTPEPDIVASTKKPVPARPPPPTNFPPPRPPPPSRPAPPPRKKKSELEFEALKTPDLDVPK
ENITSDSLLTTNMASENTVRDSLPSLDLASATSGDKIVTAQENGKAPDVQTVAGEVMGPQRPRSNSGREL
TDEEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMRRTKEYVSNDATQSDDEEKLQSQQTDTDG
GRLKQKTTQLKKFLGKSVKRAKHLAEEYGERAINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAA
HGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAFDYFNNMRMKYNTEG
RVSPSPSQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDK
TVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAA
NFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRL
YDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKA
HNAVVTSAIFAPNPSLMLSLDVQSEKLEGIDKYEDAEVLDSTSTGIVKTDNTEVLLSADFTGAIKVFINK
RKTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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