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Report for CCDS40872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40872.1 Public Mus musculus X Bcor 23 108 98 CCDS HistoryNCBI Gene:71458Re-query CCDS DB by CCDS ID:40872.1Re-query CCDS DB by GeneID:71458See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115512.8 ENSMUSP00000111174.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115512.8Link to Ensembl Protein Viewer:ENSMUSP00000111174.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115512Re-query CCDS DB by Protein ID:ENSMUSP00000111174
Original member Current member NCBI NM_175044.3 NP_778209.2 Accepted alive Link to Nucleotide Sequence:NM_175044.3Link to Protein Sequence:NP_778209.2Re-query CCDS DB by Nucleotide ID:NM_175044Re-query CCDS DB by Protein ID:NP_778209Link to BLAST:NP_778209.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778209.2 1741 Q8CGN4-2 1741 100% 0 0

Chromosomal Locations for CCDS 40872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 12037626 12037917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12038912 12039068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12039250 12039327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12040385 12040530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12041502 12041668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12046856 12047113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12047423 12047748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12048303 12048647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12048995 12049252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12054969 12055155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12056344 12059190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12060130 12060208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12061522 12061607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5226 nt):
ATGCTTTCTGCAACCCCTCTGTATGGGAACGTTCACAGCTGGATGAACAGCGAGAGGGTCCGCATGTGTG
GAACAAGTGAAGACAGGAAAATTCCTGTGAATGATGGCGACGCTTCAAAAGCCAGGCTGGAGCTGAGGGA
GGAGACTCCCCTGAGTCACAGCGTGGTGGATACCAGTGGAGCCCATCGGATCGATGGCCTGGCAGCACTG
AGCATGGACCGCACAGGCCTCATCCGGGAAGGGCTCCGGGTCCCTGGAAACATCGTTTATTCTGGCTTGT
GTGGATTGGGCTCAGAAAAAGGTCGGGAGGCTACCCCAAGCTCTCTCAGTGGCCTTGGGTTTTCTTCGGA
AAGAAATCCAGAGATGCAATTCAAACCGAATACTCCCGAGACAGTGGAGGCTTCTGCTGTCTCTGGAAAA
CCCCCAAATGGCTTCAGTGCTATATACAAAACACCGCCTGGGATACAAAAGAGCGCTGTAGCTACAGCGG
AAAGCTTGGGTTTGGATAGGCCTGCCAGTGACAAACAGAGCCCTCTCAACATCAATGGTGCTAGTTACCT
GCGGCTGCCCTGGGTCAACCCTTACATGGAGGGGGCCACTCCAGCCATATACCCTTTCCTCGACTCGCCA
AATAAGTATTCACTGAATATGTACAAGGCCTTGCTACCTCAGCAGTCCTACGGCTTGGCCCAGCCACTGT
ATTCTCCTGTCTGCACCAGTGGGGAACGCTTCCTCTACCTGCCACCCCCACACTATGTCAACCCTCACAT
CCCCTCCTCCTTGGCTTCACCCATGAGGCTCTCCACACCTTCAGCCTCTGCGGCCATTCCACCTCTCGTC
CACTGCTCAGACAAAAGCCTCCCATGGAAGATGGGCGTCAACCCTGGGAACCCAGTAGATTCCCACAGTT
ACCCCCACATCCAAAACAGTAAACAGCCCCGGGTGACCTCTGCCAAGGCAGTCAATAGTGGCCTGCCAGG
GGACACAGCTCTCCTGTTGCCTCCTTCACCTCGGCCCTCAGCCCGGGTCCACCTTCCAACTCAGCCCGCT
GCAGAGACCTACTCCGAGTTCCACAAGCACTATCCCAGGATCTCCACCTCTCCCTCAGTCACCCTGACGA
AGCCATACATGACAGCCAATAGCGAGTTCTCTACATCCAGGCTGTCCAATGGCAAGTACCCCAAGGCTCT
AGATGGGGGCGACTGTGCTCAATCCATGCCTGGGCACACCCGGAAGACAACGGTTCAAGACAGAAAAGAT
GGGGGCTCACCACCTCTGTTGGAAAAGCAGACCGTTACCAAAGATGTCACAGACAAACCACTTGACCTGT
CTTCTAAAGTGGTGGATGCGGACGCTTCCAAAGGTGACCACATGAAAAAGATGGCTCCCACAGTCCTGGT
TCACAGTCGGGCTGCAAGTGGCTTAGTGCTCTCTGGAAGTGAGATTCCGAAAGAAACACTATCTCCTCCA
GGAAATGGATGTTCTATCTATAGATCAGAGATCATCAGCACTGCTCCCTCATCCTGGGTGGTGCCAGGGC
CAAGTCCTAATGAAGAGAACAATGGCAAAAGTCTGTCACTGAAAAACAAGGCTTTGGACTGGGCAATACC
GCAACAGCGGAGTTCCTCGTGTCCCCGCATGGGTGGCACAGATGCCGTGGTCACTAATGTTTCAGGGTCC
GTGTCCAGCTCAGGACGCCCAGCCTCTGCATCACCAGCCCCCAACGCCAACGCCAATGCAGATGGCACCA
AGACCAGCAGGAGCTCGGTGGATACCACGCCATCAGTCATCCAGCATGTGGGCCAGCCCTCATCCACGCC
TGCCAAGCACGGTGGCAGCACCAGCAGCAAGGGAGCCAAAGCCAACCCAGAACCGAGCTTCAAAGCGAGT
GAGAATGGCCTCCCGCCAACCTCAATATTTCTATCTCCAAATGAAGCATTCAGGTCCCCAGCAATTCCCT
ACCCTAGGAGTTACCTCCCTTACGCAGCACCAGAAGGCATCGCTCTAAGTCCCCTCTCTTTACATGGCAA
AGGACCTGTGTATCCTCACCCAGTTTTGTTACCCAATGGCAGTCTGTTTCCTGGGCACCTTGCCCCAAAG
CCTGGCCTGCCTTACGGGCTGCATACGAGCAGGCCAGAATTTGTGACCTACCAAGATGCCCTGGGCCTGG
GCATGGTCCATCCCATGTTGATCCCACACACGCCCATTGAGATCACAAAAGAGGAGAAGCCGGAGAGACG
CTCCCGCTCCCATGAGAGAGCCCGTTATGAGGACCCAACCCTCCGTAGCCGGTTTTCTGAGATGTTGGAA
GCTAGCAGCACCAAACTGCATCCAGAAGTCCCCACTGACAAGAACCTGAAGCCAAACTCTAGCTGGAATC
AAGGGAAGACTGGGGTCAAAAGCGACAAACTGGTCTACGTAGACCTTCTCCGAGAAGAAGCAGACACTAA
AACTGATGCAGGGGCACCCAAAGCAGGCCTTGTAGCCGAGAATGTAGGTCAGGACACCGAGGCCACCAAG
CCCTCAGCTGACCCTGTGATCCAACAACGCCGTGAATTCATCTCCCTCAGAGAGGAGCTGGGCCGAATCA
CTGACTTCCATGAATCTTTCACTTTCAAACAGGCCTCAAGCCAGCCAGTGTTCAGCTTAGGCAAGGATAG
TGGTGCAGCAGGAACCAACAAAGAGAACCTGGGTGTGCAGGTAGCAACTCCATTCTTGGAGACAGCTCTG
GGCAGTGAGGGCCCTGCTGTGACTTTTGGTAAAACCCAAGAGGATCCCAAACCATTTTGTGTGGGCGGTG
CCCCTCCAAACATGGATGTCACCCCCGCCTATACCAAAGAAGGAACTGATGAGGCCGAATCCAACGATGG
CAAAGTTCTGAAACCCAAGCCATCCAAGCTGGCAAAGAGAATTGCTAACTCGGCAGGTTATGTGGGCGAC
CGATTCAAGTGTGTCACCACCGAACTGTATGCAGATTCCAGTCAGCTCAGCCGAGAGCAGCGGGCATTGC
AGCGTGCAATGATGCGCTTCTCAGAGTTGGAGATGAAAGAGAGAGAAGGTAGCCACCCAGCAACCAAAGA
CTCCGAGGTGTGCAAATTCAGCCCAGCCGACTGGGAAAGGTTGAAAGGAAATCAGGAAAAGAAGCCAAAG
TCAGTCACCCTGGAAGAGGCCATTGCCGACCAGAATGACAGTGAGAGATGTGAGTATAGCACTGGAAACA
AACATGATCTCTTTGAAGCCCCAGAGGACAAAGATCTTCCTGTGGAAAAGTATTTCTTGGAGAGGCCACC
TGTGAGTGAGCCACCCAGTGACCAGGGGGTGGTGGACACGCCACACAGCCCCACCCTCCGGCTAGACAGG
AAACGCAAACTGTCAGGTGACAGCACCCACACTGAGACCGCTGTGGAAGAGCTAGCTGAGGACCCTCTGA
AAGCCAAGCGAAGACGGATCTCCAAAGATGACTGGCCTGAGAGGGAAATGACAAACAGTTCCTCTAACCA
CTTAGAAGACCCACATTGTAATGAGCTGACCAACCTGAAGGTGTGCATTGAATTAACAGGGCTCCATCCT
AAAAAGCAACGCCACTTGCTGCACCTTAGAGAACGGTGGGAGCAGCAGGTGTCGGCAGCCGAGAGCAAAC
CTGGCCGGCAAAGCAGGAAGGAAGTGGCCCAGGCTGTTCAGCCTGAGGTCACCTCCCAGGGGACTAACAT
CACTGAAGAGAAGCCTGGCAGGAAAAAGGCAGAGGCCAAAGGCAACAGAGGCTGGTCTGAAGAGTCGCTC
AAATCCTGTGACAATGAGCAAGGCTTGCCTGTGCTCTCAGGCTCTCCGCCCATGAAGAGCCTTTCATCCA
CCAATGCAAGTGGCAAAAAGCAGACTCAGCCAAGCTGCACGCCAGCCTCAAGGCTGCCTGCCAAACAGCA
GAAAATTAAAGAAAGCCAGAAGACAGATGTGCTGTGCACAGGGGAAGACGAGGATTGCCAGGCTGCCTCC
CCGCTGCAAAAATACACAGACAACATCGAGAAGCCATCCGGGAAGAGACTGTGCAAAACCAAGCACTTGA
TACCTCAGGAGTCCAGGAGGAGCTTGCAGATCACAGGCGACTACTATGTGGAGAACACTGACACTAAGAT
GACTGTGCGGAGATTCAGAAAACGACCTGAGCCCAGTTCGGACTACGATTTGTCACCACCAGCCAAGCAG
GAGCCAAAGCCCTTTGACCGTCTACAACAATTGCTACCGGCCACCCAGGCCACCCAGCTGCCACGCTCAA
ATTCTCCTCAAGAGACCACCCAGTCTCGCCCCATGCCGCCAGAAGCTCGGAGACTTATTGTCAATAAGAA
TGCTGGCGAGACCCTCCTGCAGCGGGCTGCCCGGCTAGGCTATGAGGAAGTGGTCTTATATTGCCTGGAG
AACAAGGTCTGTGATGTCAATCATCGAGACAATGCTGGCTACTGTGCTCTGCATGAAGCTTGCGCCAGGG
GATGGCTCAACATCGTGCGCCACCTCCTTGAATATGGCGCTGATGTCAACTGCAGTGCCCAGGATGGAAC
CAGGCCTCTGCATGATGCTGTGGAGAATGACCACTTAGAAATTGTACGATTGCTTCTTTCCTATGGTGCT
GACCCTACTTTGGCCACATACTCAGGGAGAACCATCATGAAAATGACCCACAGTGAACTTATGGAGAAGT
TTTTAACAGACTATTTAAATGACCTGCAGGGTCGCAGTGAAGATGACACCAGCGGCGCTTGGGAGTTCTA
TGGCAGCTCTGTGTGTGAACCAGATGACGAAAGTGGGTACGATGTTTTGGCTAATCCCCCAGGACCAGAA
GACCCAGATGAGGAAGAGGATACCTATAGCGATTTGTTTGAGTTTGAGTTTGCTGAAAGCTCCCTCTTGC
CGTGTTATAACATCCAAGTGTCTGTCGCTCAGGGGCCACGAAACTGGCTTCTGCTCTCAGACGTGCTCAA
GAAGTTGAAAATGTCCTCCCGGATATTCCGTAGCAATTTTCCCAATCTGGAAATTGTCACCATTGCAGAG
GCGGAGTTTTACCGACAGGTCTCAACAAGTCTCTTGTTCTCCTGCCCCAAAGACCTGGAAGCCTTCAATC
CTGAAAGCAAGGAGCTGTTGGATCTGGTGGAATTCACCAATGAGCTCCAGACACTGCTGGGCTCCTCTGT
GGAGTGGCTCCACCCTAGTGACACGGGCCATGAAAACTACTGGTGA

Translation (1741 aa):
MLSATPLYGNVHSWMNSERVRMCGTSEDRKIPVNDGDASKARLELREETPLSHSVVDTSGAHRIDGLAAL
SMDRTGLIREGLRVPGNIVYSGLCGLGSEKGREATPSSLSGLGFSSERNPEMQFKPNTPETVEASAVSGK
PPNGFSAIYKTPPGIQKSAVATAESLGLDRPASDKQSPLNINGASYLRLPWVNPYMEGATPAIYPFLDSP
NKYSLNMYKALLPQQSYGLAQPLYSPVCTSGERFLYLPPPHYVNPHIPSSLASPMRLSTPSASAAIPPLV
HCSDKSLPWKMGVNPGNPVDSHSYPHIQNSKQPRVTSAKAVNSGLPGDTALLLPPSPRPSARVHLPTQPA
AETYSEFHKHYPRISTSPSVTLTKPYMTANSEFSTSRLSNGKYPKALDGGDCAQSMPGHTRKTTVQDRKD
GGSPPLLEKQTVTKDVTDKPLDLSSKVVDADASKGDHMKKMAPTVLVHSRAASGLVLSGSEIPKETLSPP
GNGCSIYRSEIISTAPSSWVVPGPSPNEENNGKSLSLKNKALDWAIPQQRSSSCPRMGGTDAVVTNVSGS
VSSSGRPASASPAPNANANADGTKTSRSSVDTTPSVIQHVGQPSSTPAKHGGSTSSKGAKANPEPSFKAS
ENGLPPTSIFLSPNEAFRSPAIPYPRSYLPYAAPEGIALSPLSLHGKGPVYPHPVLLPNGSLFPGHLAPK
PGLPYGLHTSRPEFVTYQDALGLGMVHPMLIPHTPIEITKEEKPERRSRSHERARYEDPTLRSRFSEMLE
ASSTKLHPEVPTDKNLKPNSSWNQGKTGVKSDKLVYVDLLREEADTKTDAGAPKAGLVAENVGQDTEATK
PSADPVIQQRREFISLREELGRITDFHESFTFKQASSQPVFSLGKDSGAAGTNKENLGVQVATPFLETAL
GSEGPAVTFGKTQEDPKPFCVGGAPPNMDVTPAYTKEGTDEAESNDGKVLKPKPSKLAKRIANSAGYVGD
RFKCVTTELYADSSQLSREQRALQRAMMRFSELEMKEREGSHPATKDSEVCKFSPADWERLKGNQEKKPK
SVTLEEAIADQNDSERCEYSTGNKHDLFEAPEDKDLPVEKYFLERPPVSEPPSDQGVVDTPHSPTLRLDR
KRKLSGDSTHTETAVEELAEDPLKAKRRRISKDDWPEREMTNSSSNHLEDPHCNELTNLKVCIELTGLHP
KKQRHLLHLRERWEQQVSAAESKPGRQSRKEVAQAVQPEVTSQGTNITEEKPGRKKAEAKGNRGWSEESL
KSCDNEQGLPVLSGSPPMKSLSSTNASGKKQTQPSCTPASRLPAKQQKIKESQKTDVLCTGEDEDCQAAS
PLQKYTDNIEKPSGKRLCKTKHLIPQESRRSLQITGDYYVENTDTKMTVRRFRKRPEPSSDYDLSPPAKQ
EPKPFDRLQQLLPATQATQLPRSNSPQETTQSRPMPPEARRLIVNKNAGETLLQRAARLGYEEVVLYCLE
NKVCDVNHRDNAGYCALHEACARGWLNIVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGA
DPTLATYSGRTIMKMTHSELMEKFLTDYLNDLQGRSEDDTSGAWEFYGSSVCEPDDESGYDVLANPPGPE
DPDEEEDTYSDLFEFEFAESSLLPCYNIQVSVAQGPRNWLLLSDVLKKLKMSSRIFRSNFPNLEIVTIAE
AEFYRQVSTSLLFSCPKDLEAFNPESKELLDLVEFTNELQTLLGSSVEWLHPSDTGHENYW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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