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Report for CCDS40809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40809.1 Public Mus musculus 9 Rpl14 23 108 98 CCDS HistoryNCBI Gene:67115Re-query CCDS DB by CCDS ID:40809.1Re-query CCDS DB by GeneID:67115See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165532.2 ENSMUSP00000131489.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165532.2Link to Ensembl Protein Viewer:ENSMUSP00000131489.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165532Re-query CCDS DB by Protein ID:ENSMUSP00000131489
Original member NCBI NM_025974.2 NP_080250.1 Updated not alive Link to Nucleotide Sequence:NM_025974.2Link to Protein Sequence:NP_080250.1Re-query CCDS DB by Nucleotide ID:NM_025974Re-query CCDS DB by Protein ID:NP_080250
Current member NCBI NM_025974.3 NP_080250.1 Accepted alive Link to Nucleotide Sequence:NM_025974.3Link to Protein Sequence:NP_080250.1Re-query CCDS DB by Nucleotide ID:NM_025974Re-query CCDS DB by Protein ID:NP_080250Link to BLAST:NP_080250.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080250.1 217 Q9CR57 217 100% 0 0

Chromosomal Locations for CCDS 40809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 120571539 120571541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120572096 120572197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120572768 120572862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120573576 120573675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120573764 120573817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120574095 120574394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGTGTTCAGGCGTTACGTGGAGGTTGGCCGGGTGGCCTACATTTCCTTCGGGCCCCATGCTGGAAAGC
TGGTCGCAATTGTAGATGTCATTGATCAGAACAGGGCTTTAGTGGATGGACCCTGTACTCGGGTGAGGAG
GCAGGCCATGCCCTTCAAATGCATGCAGCTCACTGACTTCATCCTCAAGTTCCCACACAGTGCCCGCCAG
AAGTATGTCCGAAAAGCTTGGGAGAAGGCGGATATCAATACGAAATGGGCAGCCACAAGATGGGCCAAGA
AAATTGATGCCAGAGAAAGGAAAGCCAAGATGACAGACTTTGATCGTTTCAAGGTCATGAAGGCAAAGAA
AATGAGGAACAGAATAATCAAGACTGAAGTAAAGAAACTTCAAAGAGCTGCTATCCTGAAAGCTTCTCCC
AAAAAAGCAGCTGTGGCCAAAGCTGCCATTGCGGCGGCTGCAGCTGCTGCTGCTGCTAAAGCTAAAGTCC
CAGCCAAGAAGGCCACAGGACCAGGCAAGAAGGCTGCAGGCCAGAAGGCTCCTGCTCAGAAGGCTGCAGG
CCAGAAGGCAGCACCTCCTGCTAAAGGTCAGAAGGGTCAGAAGACCCCAGCCCAGAAAGCACCTGCTCCA
AAGGCGGCTGGCAAGAAAGCGTGA

Translation (217 aa):
MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQ
KYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQRAAILKASP
KKAAVAKAAIAAAAAAAAAKAKVPAKKATGPGKKAAGQKAPAQKAAGQKAAPPAKGQKGQKTPAQKAPAP
KAAGKKA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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