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Report for CCDS40794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40794.1 Public Mus musculus 9 Cnot10 23 108 98 CCDS HistoryNCBI Gene:78893Re-query CCDS DB by CCDS ID:40794.1Re-query CCDS DB by GeneID:78893See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070117.7 ENSMUSP00000064840.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070117.7Link to Ensembl Protein Viewer:ENSMUSP00000064840.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070117Re-query CCDS DB by Protein ID:ENSMUSP00000064840
Original member Current member NCBI NM_153585.5 NP_705813.2 Accepted alive Link to Nucleotide Sequence:NM_153585.5Link to Protein Sequence:NP_705813.2Re-query CCDS DB by Nucleotide ID:NM_153585Re-query CCDS DB by Protein ID:NP_705813Link to BLAST:NP_705813.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705813.2 744 Q8BH15-1 744 100% 0 0

Chromosomal Locations for CCDS 40794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114591538 114591692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114593437 114593512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114597479 114597606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114597795 114597830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114598705 114598835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114601342 114601455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114610645 114610725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114613624 114613800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114614989 114615110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114617792 114617994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114619223 114619372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114622845 114622962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114625820 114625903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114626397 114626483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114627393 114627535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114629007 114629157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114631822 114631983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114632677 114632771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114639919 114639940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGGCTGCAGACAAGCCTGCAGATCAGGGAGCAGAGAAGCATGAAGGGGCAGGCCAATCATCTGGGGTCA
CGGACCAGGAGAAGGAGCTGTCCGCCAGTGCCCTCCAGGCCTTCACGTCTGGAAATTATGATGCCTGTCT
GCAACACCTTGCCTGTCTCCAAGATATAAACAAAGATGATTACAAAATTATTCTGAATACAGCAGTAGCT
GAATTTTTTAAAAATAATCAAACAACAACAGATAATTTGAGACAAACACTTAACCAGCTGAAGAATCAGG
TCCACTCGGCTGTTGAAGAGATGGATGGGTTAGACGATGTTGAGAACAGCATGCTGTATTATAACCAGGC
TGTCATTCTCTATCATCTGCGCCAGTACACGGAGGCCATATCTGTCGGCGAGAAGCTCTATCAGTTCATA
GAACCTTTCGAAGAAAAATTTGCCCAAGCGGTGTGCTTTTTGCTCGTAGACTTGTATATATTAACCCACC
AGGCTGAGAAAGCTCTGCATCTTCTTGCCGTCCTAGAAAAAATGATTTCACAGGGTAGCGGTGGCAAAAA
TGGGAAGAACGAGACTGGCAATAACAGCAGCAAAGATGGATCCAACCCTAAGGCTGAGAGTGCAGCTCTA
ATAGAGGCTGCCAAGTCCAAGATACACCAGTACAAAGTCAGAGGGTACATCCAGATGAAGTCCCTGAAGG
CTTGCAAAAGGGAAATCAAGTCTGTCATGAACACAGCTGGAAATTCTGCACCTTCCCTGTTTCTTAAAAG
CAACTTTGAGTACTTAAGGGGCAACTATCGAAAAGCGGTGAAGCTGTTGAATAGTTCAAACATTGCCGAG
CATCCAGGCTTCATGAAGACAGGTGAATGCTTGAGATGCATGTTCTGGAATAACCTTGGTTGTATCCATT
TTGCCATGAGCAAGCACAATTTGGGGATTTTCTACTTCAAGAAGGCTCTGCAGGAAAATGACAACGTCTG
CGCCCAGCTCAGTGCGGGTGGCACTGATCCAGGCAAAAAGTTTTCTGGAAGACCCATGTGTACATTGCTG
ACCAACAAAAGATATGAGCTGCTCTACAACTGTGGGATCCAGCTGCTGCACGTCGGGAGGCCTCTCGCTG
CCTTCGAGTGTCTGATTGAAGCTGTTCAGGTGTACCACGCGAATCCTCGTCTCTGGCTACGGCTGGCTGA
GTGCTGCATTGCTGCCAATAAAGGGACTTCTGAGCAAGAAACTAAAGGTCTTCCCACCAAAAAAGGCATT
GTACAGTCTATTGTTGGTCAGGGATATCACCGTAAAATAGTTCTGGCATCACAGTCAATTCAGAACACTG
TCTACAATGATGGTCAGTCTTCAGCCATTCCTGTAGCCAGTGTGGAGTTTGCAGCCATCTGTCTCAGAAA
TGCCTTGTTGCTGTTACCTGAAGAACAGCAAGATCCCAAGCAGGAAAATGGCTCCAAGAGCAGCAGCCAG
CTTGGAGGGAACACGGAAAGCAGCGAGAGCAGCGAGACGTGCAGCAGTAAGAGCCATGATGGAGATAAGT
TCATTCCCGCTCCACCGTCTTCTCCGCTGAGGAAACAGGAGTTAGAAAACCTCAAGTGCTCCATCCTTGC
TTGCAGTGCTTATGTGGCTCTGGCCTTAGGTGATAACCTCATGGCTTTGAACCATGCAGATCAGCTCCTG
CAGCAGCCCAAGCTGTCTGGCTCTCTTAAATTTTTGGGCCATTTATATGCCGCAGAAGCCCTCATCTCCC
TCGACAGGATATCTGATGCCATTACACACTTGAACCCAGAGAATGTCACTGATGTCTCCTTAGGGATCTC
TTCAAATGAGCAGGACCAAGGATCAGACAAGGGTGAAAATGAAGCAATGGAATCCTCTGGCAAGCGCGCC
CCTCAGTGCTACCCCAGTTCTGTGAACTCTGCCCGGACTGTGATGCTCTTCAACCTGGGCAGTGCCTACT
GCCTGAGGAGCGAGTACGACAAGGCCCGAAAGTGTCTGCATCAGGCGGCATCGATGATCCATCCTAAGGA
GGTGCCCCCTGAAGCCATCCTGCTGGCTGTCTACCTTGAGCTGCAGAATGGTAATACACAGCTGGCCTTG
CAGATGATCAAGCGGAACCAGCTGCTCCCCGCAGTAAAGGCGCACTCTGATGTGAGGAAGAAGACAGTGT
TCCAGCCCGTGCACCCCATCCAGCCCATCCAAATGCCAGCGTTCACCACCGTGCAGAGGAAGTGA

Translation (744 aa):
MAADKPADQGAEKHEGAGQSSGVTDQEKELSASALQAFTSGNYDACLQHLACLQDINKDDYKIILNTAVA
EFFKNNQTTTDNLRQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFI
EPFEEKFAQAVCFLLVDLYILTHQAEKALHLLAVLEKMISQGSGGKNGKNETGNNSSKDGSNPKAESAAL
IEAAKSKIHQYKVRGYIQMKSLKACKREIKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAE
HPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGGTDPGKKFSGRPMCTLL
TNKRYELLYNCGIQLLHVGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPTKKGI
VQSIVGQGYHRKIVLASQSIQNTVYNDGQSSAIPVASVEFAAICLRNALLLLPEEQQDPKQENGSKSSSQ
LGGNTESSESSETCSSKSHDGDKFIPAPPSSPLRKQELENLKCSILACSAYVALALGDNLMALNHADQLL
QQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVTDVSLGISSNEQDQGSDKGENEAMESSGKRA
PQCYPSSVNSARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLAL
QMIKRNQLLPAVKAHSDVRKKTVFQPVHPIQPIQMPAFTTVQRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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