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Report for CCDS40704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40704.1 Public Mus musculus 9 Filip1 23 108 98 CCDS HistoryNCBI Gene:70598Re-query CCDS DB by CCDS ID:40704.1Re-query CCDS DB by GeneID:70598See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093811.10 ENSMUSP00000091329.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093811.10Link to Ensembl Protein Viewer:ENSMUSP00000091329.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093811Re-query CCDS DB by Protein ID:ENSMUSP00000091329
Original member NCBI NM_001081243.2 NP_001074712.1 Updated not alive Link to Nucleotide Sequence:NM_001081243.2Link to Protein Sequence:NP_001074712.1Re-query CCDS DB by Nucleotide ID:NM_001081243Re-query CCDS DB by Protein ID:NP_001074712
Current member NCBI NM_001081243.3 NP_001074712.1 Accepted alive Link to Nucleotide Sequence:NM_001081243.3Link to Protein Sequence:NP_001074712.1Re-query CCDS DB by Nucleotide ID:NM_001081243Re-query CCDS DB by Protein ID:NP_001074712Link to BLAST:NP_001074712.1
Original member NCBI NM_001357353.1 NP_001344282.1 Updated not alive Link to Nucleotide Sequence:NM_001357353.1Link to Protein Sequence:NP_001344282.1Re-query CCDS DB by Nucleotide ID:NM_001357353Re-query CCDS DB by Protein ID:NP_001344282
Current member NCBI NM_001357353.2 NP_001344282.1 Accepted alive Link to Nucleotide Sequence:NM_001357353.2Link to Protein Sequence:NP_001344282.1Re-query CCDS DB by Nucleotide ID:NM_001357353Re-query CCDS DB by Protein ID:NP_001344282Link to BLAST:NP_001344282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074712.1 1214 Q9CS72 1214 100% 0 0
NP_001344282.1 1214 Q9CS72 1214 100% 0 0

Chromosomal Locations for CCDS 40704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 79815691 79815897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79817898 79820706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79853622 79853800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79860080 79860253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 79898195 79898470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3645 nt):
ATGAGATCTCGAAATCAAGGTGGAGAAAGTTCATCTAATGGGCATGTCTCCTGCCCCAAGCCCTCCATCA
TCAGCAGTGATGGTGGTAAGGGACCCTCAGAAGATGCAAAAAAGAACAAGGCAAATCGGAAGGGGGAGGA
TGATGTCATGGCTTCCGGAACCGTCAAACGCCACCTCAAGCCATCAGGAGAGAGTGAGAAAAAGACTAAG
AAGCCTCTGGAGTTATCCAAGGAGGACCTCATCCAGCTCCTGAGCATCATGGAAGGGGAGCTGCAGGCTC
GAGAAGATGTCATCCACATGCTGAAGACGGAGAAGACCAAGCCCGAGGTTCTGGAGGCGCATTATGGATC
TGCAGAACCAGAGAAAGTGCTTCGAGTCCTGCACCGCGATGCCATCCTTGCTCAGGAGAAGTCCATAGGA
GAAGATGTCTATGAGAAACCCATCTCAGAGCTGGACAGACTGGAGGAAAAGCAGAAGGAGACATACCGCC
GCATGCTGGAGCAGCTGCTGTTGGCTGAGAAGTGTCACAGGCGCACCGTGTACGAGCTGGAAAACGAGAA
GCACAAGCACACCGACTACATGAACAAGAGCGACGACTTCACCAACCTGCTGGAGCAGGAGCGAGAGAGG
TTGAAAAAGCTCCTTGAGCAAGAAAAGGCTTACCAAGCCCGCAAAGAAAAGGAAAACGCCAAGCGGCTCA
ACAAACTTCGGGATGAGCTTGTGAAACTCAAGTCCTTCGCACTCATGCTGGTGGATGAGAGGCAGATGCA
CATCGAGCAGCTGGGCCTGCAGAGTCAGAAAGTCCAGGACCTCACTCAGAAACTGAGAGAGGAGGAAGAA
AAACTCAAAGCCATCACTTACAAGTCCAAGGAAGACCGCCAGAAACTGCTCAAGTTGGAAGTGGACTTCG
AACACAAGGCCTCGAGGTTTTCCCAGGAGCACGAAGAGATGAACGCCAAGTTGGCTAACCAAGAGTCTCA
CAACAGGCAGCTTAGACTCAAACTGGTTGGCTTATCGCAAAGGATCGAGGAACTGGAAGAGACCAATAAA
AGTCTTCAGAAGGCCGAGGAAGAGCTTCAGGAGCTGAGAGATAAAATTGCCAAAGGGGAATGTGGAAACT
CCAGTCTCATGGCGGAAGTGGAAAGTCTGCGCAAGCGCGTGCTTGAGATGGAGGGCAAGGATGAAGAGAT
CACTAAGACCGAGGCCCAGTGCCGGGAGCTGAAGAAGAAGCTCCAAGAGGAAGAACACCACAGCAAGGAA
CTTAGACTAGAAGTGGAGAAGCTGCAGAAGAGGATGTCTGAACTGGAGAAGCTGGAGGAGGCCTTCAGCC
GCAGCAAGTCGGAATGCACCCAGCTCCATTTGAACCTGGAGAAGGAGAAGAACCTAACCAAAGACCTGCT
GAACGAGCTGGAGGTGGTCAAGAGTCGGGTTAAAGAACTCGAGTGCTCGGAGAGCAGACTGGAGAAGGTT
GAGTTAAGCCTCAAAGACGACCTCACGAAGCTGAAGTCCTTCACTGTGATGCTGGTGGACGAGAGGAAAA
ACATGATGGAGAAAATAAAGCAAGAAGAGAGGAAGGTGGATGGGTTGAATAAAAACTTCAAGGTGGAGCA
GGGGAAGGTGATGGATGTGACGGAGAAGCTAATCGAGGAAAGCAAGAAGCTTTTAAAACTCAAGTCTGAA
ATGGAGGAAAAGGTGTATAGTCTGACCAAGGAGAGGGATGAGCTGATGGGTAAACTGAGAAGCGAAGAAG
AAAGGTCCTGTGAACTGAGCTGCAGCGTTGACTTGCTAAAGAAGCGGCTTGATGGCATAGAGGAGGTGGA
GAGGGAAATCAACCGAGGCAGGCTGTGCAAGGGGTCTGAGTTCACCTGCCCGGAAGACAATAAAATCAGG
GAACTGACGCTTGAAATCGAGAGACTGAAGAAGCGGCTCCAGCAGCTGGAGGTGGTGGAGGGGGACTTGA
TGAAGACCGAGGACGAATACGACCAGTTGGAGCAGAAATTCAGAACCGAGCAGGATAAGGCAAATTTCCT
CTCCCAGCAGCTCGAGGAAATTAAGCACCAAATGGCCAAGAACAAAGCCATAGAGAAAGGGGAGGCTGTG
AGCCAGGAAGCCGAGCTGCGACACAGGTTCCGGATGGAGGAGGCTAAAAGTCGTGACTTACAGGCTGAGG
TGCAGGCTCTTAAAGAGAAGATCCACGAGCTGATGAACAAGGAAGATCAGCTCTCTCAGCTCCAGGTCGA
CTATTCGGTCCTTCAGCAAAGGTTTATGGAAGAAGAAACTAAGAACAAGAACATGGGGAGGGAGGTCCTC
AACCTGACCAAAGAGCTGGAGCTTTCCAAGCGCTACAGCCGAGCTCTCAGGCCGAGTGGAAATGGCCGAA
GGATGGTGGACGTACCCGTGGCCTCCACTGGGGTGCAGACCGAGGCGGTGTGCGGGGATGCTGCGGAGGA
GGAGACCCCGGCTGTGTTCATCCGCAAATCCTTCCAGGAAGAAAATCACATCATGAGTAATCTTCGACAG
GTAGGCCTGAAGAAACCCATGGAACGGTCCTCGGTCCTCGACAGGTATCCCCCAGCCGCCAATGAACTCA
CCATGAGGAAGTCTTGGATTCCTTGGATGAGAAAAAGAGAAAACGGACCCTCAGCTCCCCAGGAGAAAGG
GCCCAGGCCAAACCAGGGTACAGGGCACCCTGGCGAGCTGGTCCTAGCACCCAAGCAGGGCCAGCCCTTG
CACATCCGTGTGACACCTGATCACGAGAACAGCACTGCCACCCTGGAGATCACAAGCCCCACATCTGAAG
AGTTTTTCTCGAGTACCACCGTCATTCCTACCTTAGGCAACCAGAAACCACGGATCACCATAATTCCATC
ACCCAATGTCATGTCGCAAAAGCCCAAAAGTGCAGATCCTACTCTCGGCCCAGAACGAGCCATGTCCCCT
GTCACGATTACTACAATTTCCAGAGAGAAGAGCCCAGAAGGTGGAAGGGGCGCGTTTGCAGACAGGCCTG
CATCCCCCATCCAGATAATGACGGTGTCAACGTCTGCAGCGCCCCCTGAAATCGCTGTCTCTCCTGACTC
TCAGGAAGTGCCTATGGGAAGGACTATCCTCAAAGTTACCCCGGAAAAACAAACTGTTCCAACCCCCATG
CGGAAGTACAATGCCAATGCGAATATCATCACCACGGAAGACAATAAAATTCACATTCACCTGGGTTCTC
AGTTTAAGCGATCTCCCGGGCCTGCAGCAGCGGAAGGCGTGAGTCCAGTTATCACGGTCCGGCCTGTCAA
CGTAACAGCCGAGAAGGAGGTTTCTACGGGCACAGTCCTTCGCTCTCCCAGGAACCACCTCTCTTCAAGA
CCTGGTGCTAACAAAGTGACCAGCACTATAACCATAACCCCGGTCACAACGTCATCCACACGAGGAACCC
AATCAGTGTCAGGACAAGATGGGTCATCTCAGCGGCCTACACCCACCCGCATCCCCATGTCAAAAGGTAT
GAAAGCAGGAAAGCCAGTAGTGGCAGCCCCAGGAGCAGGAAATCTGACCAAATTCCAGCCTCGAGCTGAG
ACTCAGTCTATGAAAATAGAGCTGAAGAAATCTGCAGCCAGCAGCACTGCCTCTCTTGGAGGGGGGAAGG
GCTGA

Translation (1214 aa):
MRSRNQGGESSSNGHVSCPKPSIISSDGGKGPSEDAKKNKANRKGEDDVMASGTVKRHLKPSGESEKKTK
KPLELSKEDLIQLLSIMEGELQAREDVIHMLKTEKTKPEVLEAHYGSAEPEKVLRVLHRDAILAQEKSIG
EDVYEKPISELDRLEEKQKETYRRMLEQLLLAEKCHRRTVYELENEKHKHTDYMNKSDDFTNLLEQERER
LKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQMHIEQLGLQSQKVQDLTQKLREEEE
KLKAITYKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLSQRIEELEETNK
SLQKAEEELQELRDKIAKGECGNSSLMAEVESLRKRVLEMEGKDEEITKTEAQCRELKKKLQEEEHHSKE
LRLEVEKLQKRMSELEKLEEAFSRSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKV
ELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSE
MEEKVYSLTKERDELMGKLRSEEERSCELSCSVDLLKKRLDGIEEVEREINRGRLCKGSEFTCPEDNKIR
ELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQMAKNKAIEKGEAV
SQEAELRHRFRMEEAKSRDLQAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEETKNKNMGREVL
NLTKELELSKRYSRALRPSGNGRRMVDVPVASTGVQTEAVCGDAAEEETPAVFIRKSFQEENHIMSNLRQ
VGLKKPMERSSVLDRYPPAANELTMRKSWIPWMRKRENGPSAPQEKGPRPNQGTGHPGELVLAPKQGQPL
HIRVTPDHENSTATLEITSPTSEEFFSSTTVIPTLGNQKPRITIIPSPNVMSQKPKSADPTLGPERAMSP
VTITTISREKSPEGGRGAFADRPASPIQIMTVSTSAAPPEIAVSPDSQEVPMGRTILKVTPEKQTVPTPM
RKYNANANIITTEDNKIHIHLGSQFKRSPGPAAAEGVSPVITVRPVNVTAEKEVSTGTVLRSPRNHLSSR
PGANKVTSTITITPVTTSSTRGTQSVSGQDGSSQRPTPTRIPMSKGMKAGKPVVAAPGAGNLTKFQPRAE
TQSMKIELKKSAASSTASLGGGKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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