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Report for CCDS40668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40668.1 Public Mus musculus 9 Ints14 23 108 98 CCDS HistoryNCBI Gene:69882Re-query CCDS DB by CCDS ID:40668.1Re-query CCDS DB by GeneID:69882See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037504.6 ENSMUSP00000049284.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037504.6Link to Ensembl Protein Viewer:ENSMUSP00000049284.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037504Re-query CCDS DB by Protein ID:ENSMUSP00000049284
Original member Current member EBI ENSMUST00000170517.8 ENSMUSP00000127420.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170517.8Link to Ensembl Protein Viewer:ENSMUSP00000127420.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170517Re-query CCDS DB by Protein ID:ENSMUSP00000127420
Original member NCBI NM_001077631.2 NP_001071099.1 Updated not alive Link to Nucleotide Sequence:NM_001077631.2Link to Protein Sequence:NP_001071099.1Re-query CCDS DB by Nucleotide ID:NM_001077631Re-query CCDS DB by Protein ID:NP_001071099
Current member NCBI NM_001077631.3 NP_001071099.1 Accepted alive Link to Nucleotide Sequence:NM_001077631.3Link to Protein Sequence:NP_001071099.1Re-query CCDS DB by Nucleotide ID:NM_001077631Re-query CCDS DB by Protein ID:NP_001071099Link to BLAST:NP_001071099.1
Original member NCBI NM_175153.4 NP_780362.2 Updated not alive Link to Nucleotide Sequence:NM_175153.4Link to Protein Sequence:NP_780362.2Re-query CCDS DB by Nucleotide ID:NM_175153Re-query CCDS DB by Protein ID:NP_780362
Current member NCBI NM_175153.5 NP_780362.2 Accepted alive Link to Nucleotide Sequence:NM_175153.5Link to Protein Sequence:NP_780362.2Re-query CCDS DB by Nucleotide ID:NM_175153Re-query CCDS DB by Protein ID:NP_780362Link to BLAST:NP_780362.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071099.1 515 Q8R3P6-1 515 100% 0 0
NP_780362.2 515 Q8R3P6-1 515 100% 0 0

Chromosomal Locations for CCDS 40668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64964382 64964603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64966690 64966797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64971973 64972128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64972692 64972810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64973218 64973360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64975617 64975709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64978137 64978281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64979775 64979908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64981989 64982107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64983978 64984043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64985859 64986101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGCCCACTGTGGTGGTAATGGATGTGTCCCTGTCCATGACCCGACCTGTGTCTGTCGAGGGCTCTGAGG
AATACCAGCGGAAGCACCTGGCTGCCCATGGCCTGACGATGCTATTTGAACACATGGCCACAAATTACAA
GCTTGAATTCACAGCGCTGGTGGTGTTTTCGTCACTGTGGGAGCTGATGGTCCCCTTTACGAGAGACTAC
AACACCCTGCAGGAAGCACTGAGTAACATGGATGATTATGACAAAACCTGCTTGGAGTCTGCATTAGTCG
GCGTTTGCAATATTGTCCAGCAAGAATGGGGTGGAGCGATTCCTTGCCAGGTTGTTCTGGTGACTGATGG
CTGTCTTGGTATTGGCAGGGGGTCACTGCGACACTCCCTAGCTACTCAGAATCAAAGAAGTGAGAGCAAC
AGGTTTCCACTCCCCTTCCCTTTCCCATCTAAGTTATATGTCATGTGCATGGCGAACTTGGAGGAGCTTC
AGAGCACCGATTCCTTGGAATGCCTTGAACGACTCATAGACTTAAATAATGGTGAAGGGCAAATTTTTAC
TATTGATGGCCCCCTGTGTTTGAAAAATGTGCAATCTATGTTTGGAAAGCTGATAGATCTGGCGTACACA
CCTTTCCATGCTGTTCTCAAGTGTGGCCACCTAACGGCTGATGTACAAGTCTTCCCCAGGCCAGAGCCCT
TTGTTATAGATGAAGAAATTGACCCCATCCCTAAAGTCATTAACACAGACTTGGAAATAGTGGGCTTTAT
TGACATAGCTGATATTTCCAGCCCCCCAGTTTTGTCCAGGCATTTGGTCTTGCCCATAGCACTTAACAAA
GAAGGTGACGAGGTGGGTGCTGGCATCACTGATGACAATGAAGATGAGAATTCAGCCAATCAGATTGCTG
GCAAAATACCCAACTTCTGTGTCCTGCTCCACGGCAGCCTGAAGGTGGAAGGAATGGTGGCACTTGTCCA
ACTAGGGCCTGAATGGCATGGAATGCTCTACTCCCAAGCAGACAGCAAGAAGAAATCAAACCTCATGATG
TCTCTCTTCGAGCCTGGCCCAGAACCTCTCCCGTGGCTTGGGAAAATGGCCCAGTTGGGGCCCATCTCAG
ATGCTAAAGAAAATCCTTATGGGGAGGATGACAACAAGAGCCCATTCCCCCTGCAGCCCAAAAACAAACG
AAGTTATGCCCAGAATGTGACTGTCTGGATCAAACCAAGTGGCCTGCAGACAGATGTACAGAAGATCTTA
AGAAATGCAAGGAAGCTCCCTGAAAAAACACAGACATTCTATAAGGAGCTGAACAGGTTACGAAAAGCTG
CCTTAGCCTTTGGTTTCCTGGACCTGCTTAAAGGGGTGGCCGACATGCTGGAGAGGGAGTGTACCCTGCT
GCCGGACACAGCCCACCCAGACGCCGCATTCCAGCTCACCCACGCTGCCCAGCAGCTCAAGCTGGCCAGC
ACTGAGTATGCCATATATGACCACAACATCACACCCCTGCACACAGACTTCTCAGGGAGCAGCACTGAAA
GAATGTGA

Translation (515 aa):
MPTVVVMDVSLSMTRPVSVEGSEEYQRKHLAAHGLTMLFEHMATNYKLEFTALVVFSSLWELMVPFTRDY
NTLQEALSNMDDYDKTCLESALVGVCNIVQQEWGGAIPCQVVLVTDGCLGIGRGSLRHSLATQNQRSESN
RFPLPFPFPSKLYVMCMANLEELQSTDSLECLERLIDLNNGEGQIFTIDGPLCLKNVQSMFGKLIDLAYT
PFHAVLKCGHLTADVQVFPRPEPFVIDEEIDPIPKVINTDLEIVGFIDIADISSPPVLSRHLVLPIALNK
EGDEVGAGITDDNEDENSANQIAGKIPNFCVLLHGSLKVEGMVALVQLGPEWHGMLYSQADSKKKSNLMM
SLFEPGPEPLPWLGKMAQLGPISDAKENPYGEDDNKSPFPLQPKNKRSYAQNVTVWIKPSGLQTDVQKIL
RNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLERECTLLPDTAHPDAAFQLTHAAQQLKLAS
TEYAIYDHNITPLHTDFSGSSTERM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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