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Report for CCDS40667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40667.1 Public Mus musculus 9 Rpl4 23 108 98 CCDS HistoryNCBI Gene:67891Re-query CCDS DB by CCDS ID:40667.1Re-query CCDS DB by GeneID:67891See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034966.8 ENSMUSP00000034966.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034966.8Link to Ensembl Protein Viewer:ENSMUSP00000034966.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034966Re-query CCDS DB by Protein ID:ENSMUSP00000034966
Original member NCBI NM_024212.4 NP_077174.1 Updated not alive Link to Nucleotide Sequence:NM_024212.4Link to Protein Sequence:NP_077174.1Re-query CCDS DB by Nucleotide ID:NM_024212Re-query CCDS DB by Protein ID:NP_077174
Current member NCBI NM_024212.5 NP_077174.1 Accepted alive Link to Nucleotide Sequence:NM_024212.5Link to Protein Sequence:NP_077174.1Re-query CCDS DB by Nucleotide ID:NM_024212Re-query CCDS DB by Protein ID:NP_077174Link to BLAST:NP_077174.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077174.1 419 Q9D8E6 419 100% 0 0

Chromosomal Locations for CCDS 40667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64173431 64173433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64174824 64174995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64175194 64175300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64175584 64175722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64176092 64176216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64176941 64177070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64177321 64177477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64177721 64177804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64177897 64178017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64178223 64178444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCTTGTGCCCGTCCCCTCATATCGGTGTACTCCGAAAAGGGAGAGTCATCTGGCAAGAATGTCACTT
TGCCAGCTGTGTTCAAAGCTCCCATTCGACCAGATATTGTGAACTTCGTTCACACCAACTTGAGGAAAAA
CAACAGACAGCCCTATGCCGTCAGTGAATTGGCAGGTCATCAGACCAGTGCTGAGTCTTGGGGTACTGGC
AGAGCTGTGGCTCGAATTCCAAGAGTTCGAGGTGGTGGGACCCACCGATCTGGCCAGGGTGCCTTTGGAA
ATATGTGTCGTGGGGGACGCATGTTTGCACCAACCAAAACCTGGCGTCGTTGGCACCGCAGAGTGAATAC
AACCCAAAAACGATATGCCATCTGTTCTGCCCTGGCTGCCTCGGCCTTACCAGCTTTGGTGATGTCTAAA
GGTCATCGTATTGAGGAGGTTCCTGAGCTGCCGCTGGTGGTTGAAGATAAGGTTGAAGGTTACAAGAAGA
CCAAGGAGGCTGTTCAGCTGCTCAAGAAACTCAAAGCTTGGAATGACATCAAAAAGGTCTATGCCTCTCA
GAGAATGAGAGCTGGCAAGGGCAAAATGAGAAACCGACGGCGGATCCAGCGCAGGGGGCCCTGCATCATC
TATAATGAAGATAATGGTATCATCAAGGCCTTCCGCAACATCCCTGGTATTACTCTGCTTAATGTAAGCA
AGCTGAACATTTTGAAACTGGCTCCTGGTGGGCATGTGGGCCGTTTCTGCATCTGGACGGAGAGTGCTTT
CCGGAAGTTGGATGAGCTGTATGGCACTTGGCGGAAGGCTGCTTCCCTCAAGAGTAACTATAACCTGCCC
ATGCACAAGATGATGAACACCGACCTTAGCAGAATCTTGAAAAGCCCAGAAATCCAAAGAGCCCTCCGAG
CACCACGCAAGAAGATTCATCGCAGAGTCTTGAAGAAGAATCCACTGAAGAACCTGAGAATCATGTTGAA
GCTGAACCCTTACGCCAAGACTATGCGCAGGAATACCATTCTTCGCCAGGCCAGAAATCACAAACTTCGT
GTGAAAAAGCTGGAAGCAGCAGCTACTGCACTGGCAACCAAATCCGAGAAGGTTGTTCCAGAGAAGGGGA
CTGCAGACAAGAAGCCAGCGGTAGGCAAGAAAGGAAAGAAGGTGGATGCCAAGAAGCAGAAGCCTGCAGG
GAAAAAGGTGGTTGCCAAGAAACCAGCAGAGAAGAAGCCTACTACAGAAGAAAAGAAGCCAGCTGCATAA

Translation (419 aa):
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTG
RAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSK
GHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII
YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLP
MHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR
VKKLEAAATALATKSEKVVPEKGTADKKPAVGKKGKKVDAKKQKPAGKKVVAKKPAEKKPTTEEKKPAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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