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Report for CCDS40665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40665.1 Public Mus musculus 9 Pias1 23 108 98 CCDS HistoryNCBI Gene:56469Re-query CCDS DB by CCDS ID:40665.1Re-query CCDS DB by GeneID:56469See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098651.5 ENSMUSP00000096248.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098651.5Link to Ensembl Protein Viewer:ENSMUSP00000096248.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098651Re-query CCDS DB by Protein ID:ENSMUSP00000096248
Original member Current member NCBI NM_019663.3 NP_062637.2 Accepted alive Link to Nucleotide Sequence:NM_019663.3Link to Protein Sequence:NP_062637.2Re-query CCDS DB by Nucleotide ID:NM_019663Re-query CCDS DB by Protein ID:NP_062637Link to BLAST:NP_062637.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062637.2 651 O88907 651 100% 0 0

Chromosomal Locations for CCDS 40665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 62881968 62882261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62884772 62884809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62887308 62887450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62892126 62892306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62893129 62893259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62895831 62895991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62902759 62902832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62912750 62912855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62919351 62919485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62920458 62920548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62923281 62923328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62923571 62923655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62951756 62952200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62980848 62980871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1956 nt):
ATGGCGGACAGTGCGGAACTAAAGCAAATGGTTATGAGCCTTAGAGTTTCTGAACTCCAAGTACTGTTGG
GCTACGCTGGGAGGAACAAGCACGGACGCAAACACGAACTTCTTACAAAAGCCCTGCATTTGTTAAAGGC
TGGCTGTAGTCCTGCTGTACAAATGAAAATTAAAGAACTCTACAGGAGGCGGTTCCCTCAGAAAATTATG
ACGCCTGCGGACTTGTCTATCCCCAACGTACATTCAAGTCCTATGCCTCCGACTCTTTCTCCATCCACCA
TTCCACAGCTCACTTATGATGGCCACCCTGCATCATCCCCACTACTCCCTGTTTCTCTTCTGGGACCCAA
ACATGAACTGGAACTCCCACATCTCACGTCAGCGCTGCACCCAGTCCACCCGGACATAAAGCTGCAGAAG
CTACCATTCTATGACCTGTTGGATGAACTGATCAAGCCCACCAGTCTAGCTTCAGACAACAGCCAGCGCT
TTCGGGAAACCTGTTTTGCATTTGCCTTGACACCACAACAGGTGCAGCAGATCAGCAGCTCCATGGATAT
TTCTGGGACCAAATGTGACTTCACAGTGCAGGTCCAATTAAGGTTTTGTTTATCAGAAACCAGTTGTCCA
CAAGAAGATCACTTCCCACCCAACCTTTGTGTAAAAGTGAATACAAAACCTTGCAGCCTTCCAGGTTACC
TTCCACCTACTAAAAACGGTGTGGAACCAAAGCGACCTAGCCGACCAATTAATATCACCTCACTTGTCCG
ATTGTCCACGACAGTACCAAATACCATTGTTGTTTCTTGGACTGCAGAAATTGGAAGAACCTATTCCATG
GCAGTATATCTTGTAAAACAGTTGTCCTCAACAGTTCTTCTTCAGAGGTTACGAGCAAAGGGAATAAGGA
ATCCGGATCATTCTAGAGCTTTAATTAAAGAGAAGTTAACTGCAGATCCAGATAGTGAGATAGCTACTAC
CAGCCTACGGGTTTCGCTGCTGTGTCCACTTGGGAAAATGCGACTGACAATCCCCTGTCGGGCACTTACC
TGCTCCCACCTTCAGTGTTTTGATGCAACTCTTTACATTCAAATGAATGAGAAAAAACCAACATGGGTTT
GTCCTGTCTGTGATAAGAAGGCCCCATATGAACACCTTATTATTGACGGGTTGTTTATGGAAATTCTAAA
GTACTGCACAGACTGTGACGAGATACAGTTTAAGGAGGATGGCTCGTGGGCTCCAATGAGGTCAAAGAAG
GAGGTTCAAGAAGTCACTGCCTCCTACAATGGAGTTGATGGTTGCTTGAGCTCCACATTGGAGCATCAGG
TAGCGTCCCACAACCAGTCCTCAAATAAAAACAAGAAAGTCGAGGTCATTGACCTAACCATTGACAGCTC
GTCAGATGAAGAGGAGGAAGAACCCCCTGCCAAGAGGACCTGTCCTTCCCTGTCTCCTACGTCACCACTA
AGTAATAAAGGCATTTTAAGTCTTCCTCATCAAGCCTCGCCTGTGTCCCGCACCCCAAGCCTTCCTGCTG
TAGATACAAGCTACATCAACACCTCCCTCATCCAGGACTACAGGCACCCCTTCCACATGACGCCTATGCC
TTATGACTTACAAGGATTAGATTTCTTTCCTTTCTTATCAGGAGACAATCAGCATTACAACACCTCCCTG
CTAGCCGCAGCTGCAGCGGCGGTCTCAGATGACCAGGACCTCCTGCACTCCTCCCGGTTTTTCCCGTATA
CCTCCTCGCAGATGTTTCTCGACCAGCTAAGTGCAGGAGGGAGCACATCTCTGCCAGCCACCAACGGAAG
CAGTAGCGGCAGCAACAGCAGCCTTGTGTCTTCCAACAGTCTGAGAGAGAGCCATGGCCATGGTGTGGCC
AGCAGGAGCAGCGCAGACACAGCGTCCATCTTTGGCATCATACCAGACATTATCTCATTGGACTGA

Translation (651 aa):
MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKIM
TPADLSIPNVHSSPMPPTLSPSTIPQLTYDGHPASSPLLPVSLLGPKHELELPHLTSALHPVHPDIKLQK
LPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISGTKCDFTVQVQLRFCLSETSCP
QEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRTYSM
AVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLLCPLGKMRLTIPCRALT
CSHLQCFDATLYIQMNEKKPTWVCPVCDKKAPYEHLIIDGLFMEILKYCTDCDEIQFKEDGSWAPMRSKK
EVQEVTASYNGVDGCLSSTLEHQVASHNQSSNKNKKVEVIDLTIDSSSDEEEEEPPAKRTCPSLSPTSPL
SNKGILSLPHQASPVSRTPSLPAVDTSYINTSLIQDYRHPFHMTPMPYDLQGLDFFPFLSGDNQHYNTSL
LAAAAAAVSDDQDLLHSSRFFPYTSSQMFLDQLSAGGSTSLPATNGSSSGSNSSLVSSNSLRESHGHGVA
SRSSADTASIFGIIPDIISLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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