NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40574.1 Public Mus musculus 9 Kirrel3 23 108 98 CCDS HistoryNCBI Gene:67703Re-query CCDS DB by CCDS ID:40574.1Re-query CCDS DB by GeneID:67703See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115148.8 ENSMUSP00000110801.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115148.8Link to Ensembl Protein Viewer:ENSMUSP00000110801.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115148Re-query CCDS DB by Protein ID:ENSMUSP00000110801
Original member NCBI NM_026324.3 NP_080600.1 Updated not alive Link to Nucleotide Sequence:NM_026324.3Link to Protein Sequence:NP_080600.1Re-query CCDS DB by Nucleotide ID:NM_026324Re-query CCDS DB by Protein ID:NP_080600
Current member NCBI NM_026324.4 NP_080600.1 Accepted alive Link to Nucleotide Sequence:NM_026324.4Link to Protein Sequence:NP_080600.1Re-query CCDS DB by Nucleotide ID:NM_026324Re-query CCDS DB by Protein ID:NP_080600Link to BLAST:NP_080600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080600.1 766 Q8BR86-4 766 100% 0 0

Chromosomal Locations for CCDS 40574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34489104 34489158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34911784 34911861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34939112 34939261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34944370 34944519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34990935 34991092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35000855 35001005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35007693 35007798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35013268 35013416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35015255 35015382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35016422 35016548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35020091 35020191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35023454 35023652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35028332 35028439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35029774 35029883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35034202 35034288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35034837 35035280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGAGACCTTTCCAGCTGGATTTGCTCTTCCTCTGCTTCTTCCTCTTCAGTCAAGAGCTTGGCCTCCAGA
AGAGAGGATGCTGTCTGGTACTGGGCTACATGGCCAAGGACAAGTTTCGGAGAATGAATGAAGGTCAAGT
CTACTCCTTCAGCCAGCAACCCCAGGACCAAGTGGTGGTGTCAGGACAGCCAGTGACTCTGCTGTGTGCC
ATCCCTGAATATGATGGCTTCGTCCTGTGGATCAAAGATGGCTTGGCTCTGGGTGTAGGCAGAGACCTCT
CAAGTTACCCCCAGTACCTGGTGGTGGGGAACCACCTCTCAGGAGAGCATCACCTGAAGATCCTGAGGGC
TGAGCTTCAGGATGATGCCGTGTATGAGTGCCAGGCCATCCAGGCTGCCATCCGGTCCCGCCCTGCACGC
CTCACCGTCCTGGTGCCACCAGATGACCCCATCATCCTAGGGGGGCCTGTGATCAGCCTTCGGGCAGGGG
ACCCCCTCAACCTCACCTGCCACGCAGACAATGCCAAGCCTGCGGCTTCCATCATCTGGCTACGTAAAGG
AGAGGTCATCAATGGAGCCACCTACTCCAAGACCCTGCTTCGAGACGGCAAACGAGAAAGCATTGTCAGC
ACCCTCTTCATCTCCCCAGGAGACGTGGAAAATGGACAGAGTATTGTGTGCCGAGCCACCAACAAAGCCA
TCCCCGGAGGAAAAGAGACCTCTGTCACCATAGACATCCAGCATCCACCGCTTGTCAACTTGTCCGTGGA
ACCACAGCCGGTATTGGAGGACAACATCGTCACGTTCCACTGCTCTGCAAAGGCCAACCCAGCTGTCACC
CAGTACAGGTGGGCCAAACGGGGTCACATCATCAAGGAGGCATCTGGGGAGCTGTATAGGACCACGGTGG
ACTACACATACTTCTCAGAGCCTGTATCCTGTGAAGTAACCAATGCCCTGGGCAGCACCAACCTCAGCCG
CACAGTGGATGTATACTTCGGTCCTCGAATGACCTCAGAGCCTCAGTCACTGCTGGTAGATCTGGGCTCC
GATGCTGTCTTCAGCTGTGCGTGGATCGGCAACCCGTCTCTGACCATCGTGTGGATGAAACGAGGTTCTG
GTGTGGTCCTGAGCAATGAAAAGACCCTAACCCTCAAATCTGTCCGCCAAGAGGATGCTGGGAAGTACGT
GTGCCGGGCTGTGGTGCCCCGGGTAGGAGCTGGGGAGAGAGAGGTGACCTTGACTGTCAATGGACCCCCC
ATCATCTCCAGCACACAGACCCAGCACGCCCTCCACGGAGAGAAGGGCCAGATCAAATGCTTCATCCGGA
GCACACCACCGCCTGACCGAATTGCCTGGTCCTGGAAGGAGAATGTGCTGGAGTCAGGGACATCAGGGCG
CTACACAGTGGAGACGGTGAACACGGAGGAGGGAGTCATCTCCACATTGACCATTAGCAACATTGTGCGT
GCTGACTTCCAGACCATATACAACTGTACAGCCTGGAACAGCTTTGGCTCTGACACAGAGATCATCCGAC
TCAAGGAACAAGAGTCTGTACCAATGGCCGTCATCATCGGGGTGGCCGTAGGAGCTGGCGTGGCCTTCCT
CGTCCTAATGGCAACCATTGTGGCCTTCTGCTGTGCCCGTTCCCAGAGAAATCTCAAAGGTGTTGTATCA
GCCAAAAATGATATTCGAGTGGAAATTGTGCACAAGGAGCCATCTTCTGGCCGGGAGGCTGAGGACCACA
CCACCATAAAGCAGCTGATGATGGACCGGGGTGAATTCCAACAAGACTCGGTGCTGAAACAGCTGGAGGT
CCTCAAAGAAGAGGAGAAGGAGTTTCAGAACCTGAAGGACCCCACCAACGGCTACTACAGCGTCAACACC
TTCAAAGAACACCATTCAACTCCAACCATCTCCCTGTCCAGCTGCCAGCCAGACCTGCGTCCGACAGGCA
AACAGCGTGTGCCCACAGGCATGTCCTTCACCAACATCTACAGCACCTTGAGCGGCCAGGGCCGCCTCTA
CGACTATGGACAGAGGTTTGTGCTGGGCATGGGCAGCTCTTCCATTGAGCTTTGTGAGCGGGAGTTTCAG
AGGGGCTCCCTCAGCGACAGCAGCTCCTTCCTGGACACGCAGTGTGACAGCAGCGTCAGCAGCAGCGGCA
AGCAAGATGGCTACGTGCAGTTTGACAAGGCCAGCAAGGCTTCTGCCTCCTCTTCCCACCATTCCCAGTC
CTCTTCCCAGAACTCCGACCCCAGCCGACCCCTGCAGCGGCGGATGCAGACTCACGTCTGA

Translation (766 aa):
MRPFQLDLLFLCFFLFSQELGLQKRGCCLVLGYMAKDKFRRMNEGQVYSFSQQPQDQVVVSGQPVTLLCA
IPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLSGEHHLKILRAELQDDAVYECQAIQAAIRSRPAR
LTVLVPPDDPIILGGPVISLRAGDPLNLTCHADNAKPAASIIWLRKGEVINGATYSKTLLRDGKRESIVS
TLFISPGDVENGQSIVCRATNKAIPGGKETSVTIDIQHPPLVNLSVEPQPVLEDNIVTFHCSAKANPAVT
QYRWAKRGHIIKEASGELYRTTVDYTYFSEPVSCEVTNALGSTNLSRTVDVYFGPRMTSEPQSLLVDLGS
DAVFSCAWIGNPSLTIVWMKRGSGVVLSNEKTLTLKSVRQEDAGKYVCRAVVPRVGAGEREVTLTVNGPP
IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETVNTEEGVISTLTISNIVR
ADFQTIYNCTAWNSFGSDTEIIRLKEQESVPMAVIIGVAVGAGVAFLVLMATIVAFCCARSQRNLKGVVS
AKNDIRVEIVHKEPSSGREAEDHTTIKQLMMDRGEFQQDSVLKQLEVLKEEEKEFQNLKDPTNGYYSVNT
FKEHHSTPTISLSSCQPDLRPTGKQRVPTGMSFTNIYSTLSGQGRLYDYGQRFVLGMGSSSIELCEREFQ
RGSLSDSSSFLDTQCDSSVSSSGKQDGYVQFDKASKASASSSHHSQSSSQNSDPSRPLQRRMQTHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH