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Report for CCDS40483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40483.1 Public Mus musculus 8 Syce1l 23 108 98 CCDS HistoryNCBI Gene:668110Re-query CCDS DB by CCDS ID:40483.1Re-query CCDS DB by GeneID:668110See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095173.2 ENSMUSP00000092796.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095173.2Link to Ensembl Protein Viewer:ENSMUSP00000092796.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095173Re-query CCDS DB by Protein ID:ENSMUSP00000092796
Original member Current member NCBI NM_001048145.1 NP_001041610.1 Accepted alive Link to Nucleotide Sequence:NM_001048145.1Link to Protein Sequence:NP_001041610.1Re-query CCDS DB by Nucleotide ID:NM_001048145Re-query CCDS DB by Protein ID:NP_001041610Link to BLAST:NP_001041610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041610.1 247 Q5D525-1 247 100% 0 0

Chromosomal Locations for CCDS 40483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 113643237 113643303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113649487 113649549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113651606 113651665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113651744 113651824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113652513 113652560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113652823 113652877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113654032 113654104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113654765 113654834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113654911 113654995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113655096 113655168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 113655396 113655464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGCTGCGGAGCTGGAGCCTTTGATGGCGGAGTGGCTGGGAGCTGAGAAAGCTGAAGACACCCGAGGGC
AGGCCGCATCTCTGAATACGATGGAAGACTTGCTGGAGACAGTGAAAAAGCTACAGAAAGAGGGAAGCCT
GGAGCCCCAGATTGAGGACCTGATCCACCGCATTAATGAGCTGCAGCAAGGTCCAGCAAAGAAGAGATCC
AGTGAGGAGCTGGGAGAGGCTCAAGCACTCCAGGAAGCCATGCACAGGGAACTAGACTCCTTAAATGAAG
AGAGAGTGCACCTAGAGGAGGTCCTGCGCAAAAAGCAAGAGGCTGTGTCAATTCTCAAGAAGCATCCCCA
AGAGAGAGACAGTGACACTCCACACTTGGATGCTCAACAACTGGAGGAGAGGCTGGCGGATCTGGCAAGG
CAACACAAGGACCTCTGGGAGTTCCATGTCCTGCAGCAGCGACTGGCCCAGGAGATCAGCACGATGGAGC
ACAGGAAAGATCAGCTTCTTGCAGAGAGGACTCTGCTGCGAGCCAGGCTGGAGAAGGTGGAGCAGCGGCT
GCAGGAGGCCAGAGAGACCTGGGACAGCCCAGGGAACTGTGGGCTGAAGACAGAGCTGGAGGAATTGGAG
GGGCAGTCCCAGCGCAGCCCAGAAGCTCAGAATGATAAAGGGGAGGCTAGCCAAGAGGAACAGCATCATT
TGGAGACATCAGAAGAGTTGCCAAGGACAGGAACGCTCTGCTAA

Translation (247 aa):
MAAELEPLMAEWLGAEKAEDTRGQAASLNTMEDLLETVKKLQKEGSLEPQIEDLIHRINELQQGPAKKRS
SEELGEAQALQEAMHRELDSLNEERVHLEEVLRKKQEAVSILKKHPQERDSDTPHLDAQQLEERLADLAR
QHKDLWEFHVLQQRLAQEISTMEHRKDQLLAERTLLRARLEKVEQRLQEARETWDSPGNCGLKTELEELE
GQSQRSPEAQNDKGEASQEEQHHLETSEELPRTGTLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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