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Report for CCDS40462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40462.1 Public Mus musculus 8 Pard6a 23 108 98 CCDS HistoryNCBI Gene:56513Re-query CCDS DB by CCDS ID:40462.1Re-query CCDS DB by GeneID:56513See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098444.8 ENSMUSP00000096043.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098444.8Link to Ensembl Protein Viewer:ENSMUSP00000096043.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098444Re-query CCDS DB by Protein ID:ENSMUSP00000096043
Original member Current member NCBI NM_001047436.2 NP_001040901.1 Accepted alive Link to Nucleotide Sequence:NM_001047436.2Link to Protein Sequence:NP_001040901.1Re-query CCDS DB by Nucleotide ID:NM_001047436Re-query CCDS DB by Protein ID:NP_001040901Link to BLAST:NP_001040901.1

Chromosomal Locations for CCDS 40462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105701303 105701317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105702174 105702396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105702608 105703362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGAGAGCGATCCAGTTTGACGCCGAGTTCCGACGCTTTGCACTACCCCGCACTTCGGTGAGAGGCTTTC
AGGAGTTCTCGCGATTGCTGTGTGTGGTACACCAGATCCCTGGCCTGGACGTCCTGCTTGGCTATACGGA
TGCTCACGGTGACTTGCTGCCCCTCACCAACGATGACAGTTTGCACCGGGCCCTGGCCAGCGGGCCCCCA
CCTCTGCGCCTCTTGGTTCAGAAACGGGCAGAAGGTGACTCGAGTGGCCTGGCTTTTGCCTCCAACTCTC
TACAAAGGCGCAAGAAAGGGCTCCTGCTACGACCAGTGGCACCTCTGCGCACCAGGCCACCCTTGTTAAT
CAGCTTGCCCCAAGATTTCCGCCAGGTGTCTTCAGTTATAGATGTGGACCTACTACCTGAGACCCACCGA
CGAGTGAGGCTGCACAAACATGGTTCAGACCGTCCCCTGGGCTTCTACATTCGAGATGGCATGAGTGTTC
GCGTGGCTCCCCAGGGCCTGGAGCGGGTTCCAGGTATCTTCATCTCCCGCCTGGTACGTGGGGGCCTGGC
TGAGAGTACAGGGCTGCTGGCGGTCAGTGATGAGATCCTTGAGGTCAACGGCATTGAGGTGGCCGGGAAG
ACCTTGGACCAAGTGACGGACATGATGGTCGCCAACAGCCACAACCTCATCGTCACTGTCAAGCCTGCCA
ACCAGCGTAATAATGTGGTACGGGGGGCATCTGGGCGTCTGACAGGGCCTTCCTCTGTAGGGCCTGGGCC
TACTGATCCTGACAGTGACGATGACAGCAGTGACCTGGTCATTGAGAATCGCCACCCTCCCTGTTCTAAT
GGGCTGTCTCAGGGGCCCCTGTGCTGGGACCTGCAACCTGGCTGCCTACTTCCTGGTGCTGGCAGCTCTC
TGCCCTCCTTGGATAGCAGAGAGCAAGCCAATTCTGGCTGGGGGAATGGCATGCGAGGTGATGTTAGCGG
ATTCAGCCTCTGA

Translation (330 aa):
MRAIQFDAEFRRFALPRTSVRGFQEFSRLLCVVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPP
PLRLLVQKRAEGDSSGLAFASNSLQRRKKGLLLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHR
RVRLHKHGSDRPLGFYIRDGMSVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGK
TLDQVTDMMVANSHNLIVTVKPANQRNNVVRGASGRLTGPSSVGPGPTDPDSDDDSSDLVIENRHPPCSN
GLSQGPLCWDLQPGCLLPGAGSSLPSLDSREQANSGWGNGMRGDVSGFSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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