NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40448.1 Public Mus musculus 8 Cdh8 23 108 98 CCDS HistoryNCBI Gene:12564Re-query CCDS DB by CCDS ID:40448.1Re-query CCDS DB by GeneID:12564See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000128860.7 ENSMUSP00000117326.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128860.7Link to Ensembl Protein Viewer:ENSMUSP00000117326.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128860Re-query CCDS DB by Protein ID:ENSMUSP00000117326
Original member Current member NCBI NM_007667.3 NP_031693.2 Accepted alive Link to Nucleotide Sequence:NM_007667.3Link to Protein Sequence:NP_031693.2Re-query CCDS DB by Nucleotide ID:NM_007667Re-query CCDS DB by Protein ID:NP_031693Link to BLAST:NP_031693.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031693.2 799 P97291 799 100% 0 0

Chromosomal Locations for CCDS 40448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 99030565 99031058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99033210 99033461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99098830 99098947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99111671 99111792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99171266 99171402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99190205 99190458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99196240 99196427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99200233 99200400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99230403 99230522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99279407 99279701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 99400726 99400977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGCCAGAAAGGCTAGCTGAGACGCTCATGGACCTCTGGACTCCATTAATAATATTATGGATTACCCTCC
CTTCTTGTGTATACACGGCTCCGATGAATCAGGCTCACGTTTTAACTACTGGATCCCCTTTGGAACTAAG
CAGGCAGAGTGAAGACATGCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTC
CTGGAAGAATTTTCTGGACCTGAACCGATTCTCGTTGGCCGGTTACACACAGATCTGGATCCTGGAAGCA
AAAAAATCAAGTATATCCTATCGGGTGATGGAGCTGGCACAATCTTTCAAATAAATGATATAACTGGAGA
TATCCATGCTATCAAAAGACTTGACCGAGAGGAAAAGGCTGAATATACGTTAACGGCTCAGGCAGTGGAC
TTTGAGACAAACAAGCCCCTTGAGCCTCCTTCTGAATTTATTATTAAGGTTCAAGATATCAACGACAATG
CACCTGAGTTCCTCAATGGACCTTATCATGCTACTGTTCCAGAGATGTCCATTTTGGGTACATCTGTCAC
TAATGTAACTGCCACTGATGCTGACGACCCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGTATCTTG
GAGGGACAGCCGTATTTTTCCATTGAGCCTGAAACAGCCATTATAAAAACTGCCCTTCCTAACATGGACA
GAGAAGCCAAGGAGGAATACCTGGTCGTAATACAAGCCAAAGATATGGGTGGACACTCTGGTGGTCTGTC
TGGAACCACAACACTCACAGTGACCCTGACTGATGTTAATGACAATCCTCCAAAATTTGCTCAGAGTTTG
TATCACTTCTCAGTACCAGAAGATGTGGTCCTTGGCACTGCGATAGGAAGGGTTAAGGCTAATGATCAGG
ATATTGGTGAAAATGCACAATCATCCTATGACATCATTGATGGAGATGGGACAGCACTATTCGAAATCAC
TTCTGATGCCCAGGCCCAGGATGGTGTTATAAGACTGAGAAAGCCTCTGGACTTTGAGACCAAAAAATCC
TATACTCTGAAGGTGGAAGCAGCCAATATCCACATCGACCCACGTTTCAGTAGCAGGGGACCCTTTAAGG
ATACAGCAACAGTCAAAATTGTCGTAGAGGATGCTGATGAGCCTCCGGTCTTCTCTTCACCAACTTACCT
CCTTGAAGTTCATGAAAATGCTGCTTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGACCCTGATATC
ACTTCCAGTCCAATAAGGTTTTCCATTGACCGCCACACTGACCTGGAAAGACAGTTCAACATCAATGCAG
ATGATGGGAAGATAACACTGGCAACTCCACTGGACAGAGAACTAAGTGTTTGGCACAACATCACCATCAT
TGCTACTGAGATCAGGAACCACAGTCAGATATCTCGAGTGCCTGTTGCTATTAAAGTGCTGGATGTCAAT
GACAACGCCCCTGAATTCGCATCCGAATATGAGGCATTTTTATGTGAAAATGGAAAACCCGGCCAAGTCA
TTCAAACAGTAAGTGCCATGGACAAAGACGATCCCAAAAACGGACATTTTTTCTTGTACAGTCTTCTTCC
AGAAATGGTCAACAACCCAAATTTCACCATCAAGAAAAATGAAGATAATTCCCTGAGCATTCTGGCAAAA
CATAATGGATTCAACCGCCAGAAGCAAGAAGTCTACCTTCTGCCTATAGTGATCAGTGACAGTGGAAACC
CCCCTCTGAGTAGCACCAGTACGTTGACCATCCGAGTCTGTGGCTGTAGCAATGATGGCGTGGTCCAGTC
GTGCAATGTTGAAGCTTATGTCCTTCCTATTGGACTCAGTATGGGCGCCTTAATTGCTATATTAGCATGC
ATCATTTTGCTGCTCGTCATTGTGGTTCTGTTTGTTACCCTGAGGAGGCACAAAAATGAACCACTTATTA
TCAAAGATGACGAAGACGTTCGAGAAAACATCATTCGCTACGACGACGAAGGAGGAGGGGAGGAGGACAC
AGAGGCTTTTGACATTGCAACTTTGCAAAACCCAGATGGAATTAATGGATTTTTACCCCGTAAGGATATT
AAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAAT
TTATAAATGTAAGGCTGCATGAGGCAGATAATGACCCCACGGCCCCACCATATGACTCCATACAGATTTA
TGGCTATGAAGGCCGAGGGTCTGTGGCTGGCTCCCTCAGCTCCTTGGAGTCCACCACATCAGACTCAGAC
CAGAATTTTGACTACCTCAGTGACTGGGGTCCCCGCTTTAAGAGACTGGGCGAACTCTACTCTGTTGGTG
AAAGTGACAAAGAAACTTGA

Translation (799 aa):
MPERLAETLMDLWTPLIILWITLPSCVYTAPMNQAHVLTTGSPLELSRQSEDMRILSRSKRGWVWNQMFV
LEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVD
FETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSIL
EGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSL
YHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKS
YTLKVEAANIHIDPRFSSRGPFKDTATVKIVVEDADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDI
TSSPIRFSIDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQISRVPVAIKVLDVN
DNAPEFASEYEAFLCENGKPGQVIQTVSAMDKDDPKNGHFFLYSLLPEMVNNPNFTIKKNEDNSLSILAK
HNGFNRQKQEVYLLPIVISDSGNPPLSSTSTLTIRVCGCSNDGVVQSCNVEAYVLPIGLSMGALIAILAC
IILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRKDI
KPDLQFMPRQGLAPVPNGVDVDEFINVRLHEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESTTSDSD
QNFDYLSDWGPRFKRLGELYSVGESDKET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH