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Report for CCDS40405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40405.1 Public Mus musculus 8 Palm3 23 108 98 CCDS HistoryNCBI Gene:74337Re-query CCDS DB by CCDS ID:40405.1Re-query CCDS DB by GeneID:74337See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055077.6 ENSMUSP00000051396.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055077.6Link to Ensembl Protein Viewer:ENSMUSP00000051396.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055077Re-query CCDS DB by Protein ID:ENSMUSP00000051396
Original member NCBI NM_028877.1 NP_083153.1 Updated not alive Link to Nucleotide Sequence:NM_028877.1Link to Protein Sequence:NP_083153.1Re-query CCDS DB by Nucleotide ID:NM_028877Re-query CCDS DB by Protein ID:NP_083153
Current member NCBI NM_028877.2 NP_083153.1 Accepted alive Link to Nucleotide Sequence:NM_028877.2Link to Protein Sequence:NP_083153.1Re-query CCDS DB by Nucleotide ID:NM_028877Re-query CCDS DB by Protein ID:NP_083153Link to BLAST:NP_083153.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083153.1 734 A2TJV2 734 100% 0 0

Chromosomal Locations for CCDS 40405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84021488 84021528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84024352 84024400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84026194 84026274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84026749 84026891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84027000 84027084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84028126 84028171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84028306 84030065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2205 nt):
ATGGCTCTGCAGACCCCGGTGTTGTCTCCGGCCACACCCACGGTCATGGCGGAGAGCGCCCTCTATCGGC
AGCGGCTGGAGGTCATCGCTGAGAAGCGGCGGCTGCAGGAGGAGATCGGCGCCGCGCGTCGCGAGCTGGA
GGAGGAGAAACTCCGCGTGGAGCGGCTCAAGAGGAAATCTCTCCGAGAACGTTGGCTCATGGACGGGGCA
GCTGAAGGGCCAGAACGGCCGGAGGAACCCGCCTCCAAGGACCCACAGTCGCCTGAGGGACAGGCCCAGG
CTCGAATTCGCAACCTGGAAGACAGTTTGTTTTCACTCCAGTCACAGCTACAGCTGTTGCAAAGTGCGTC
CACAGGTGCTCAACACAGACCTGCTGGTAGGCCCGCCTGGCGCAGAGAGGGTCCCCGTCCTCTCTCTCAG
TCTGCCATGGAAGCAGCTCCTACCGCCCCGACTGATGTGGACAAGCGAACTTCCCTGCCAGATGCTCCAG
TGGGCATGTCCCCTGAGTCTCCTTCTGATCCCAGGGAGGAGTCGATTGCGGTTCTACCAGCCTCGAGGCC
ATCCACTGAAGCTATAGGGACATCTTCAGAAGCCAATGGCCCCTGCCCTGGGCACAGCCCTCTCCCAGAG
CAGCTGAGTCTAGGGGTGTCGAGTGTCACTAAGGCCAAAGGAGATGGTGCAGTGGAGGTGGTTTGGGCTG
GGCTTAGAGCCACTGAGAACAGTGCCACAGGCCCCACAGATGTGGAGCTGGAGGCTAAGGTGGAAGAAGT
GGTTCTGGAGGCCATTGGGGCCAGGCAGGGCACCAGCAGCCCTGAGCTCCCCACTTGGGTGAAGGAGGGC
AGGGGTGTAGTGGAAGTGGTCTGGGAGGGGCTGGGAGGCAGGGATCTTGATGTCACAGGGGAGTCAGGCA
GGGATGCAGAGGCCACACACACCAGTTCCAGGAGACTCCAGGAGCAATTTGAGGCTGAAACTTGCAGAAA
AGAAGAAGGTGCTTCCAGAGATAGTCTTGAGGGTGTTGGGCAGGGAGGTCCTGGAGTAGAGGAGGGATCC
TTCATTTGGGTGGAGAGAGTGGCCCTCAGCGAAGACTGGGAGGAGATTTTGATGGAGGGTTTGGAAGCAC
CGCAGGGGGCAGGGTCTGCAGGAGAACCTGAGGCTTTGATTGGAGCACAGCCCAGAGGAGGTGAAGCGTC
CTGGGAGGTAGAGAAGAGAGAAGTAGAGAAAGTTGAGGGCATAGAAGAGAAGGGAAGGGCAGAAAAGCTC
GGGGCAGAGAGGGAGGATGGTGTAGCTGTGCTGCCAGATGAGACCCAGGGAAGAGAGGAAAACGAGGCAG
AAAAGGTAGAGAGAAAAGACAGTGAGGGCCCCTTTCCAGCAGAGATAGCAACAGATGAGGAAAAGTGGGA
GGTGAAAACGACGGAAGGTGAAGAGTCGTTGGAAGTAGAAAAGGGAGGTGAGGCAGAGCCGGTCACCACT
GAGAAGCCATTGGTGACAGAAAAAAAGCCAGAGGGCTCACTGGAGACAGAGAGAAAAGGAAGTGAGATGC
CATTGGACCAGGAGAAAGATGGTGAGGGCTCATTGGACAGAGAATCAAAAACAACTGAGATACTATTGGA
TGGAGAGATAGGAGATAAGAGCTCATTGGATGAAACTAAAGGAAGCAAGAAACTATTAGATGAGAAGACA
GGAGGTGAGGGCTCATTGGATGAAGAAGCTGAAGGAAGTAAGAAACTATTGGACAGGGAGGCAGATGGCA
TCGAGCCATTCTCTGAGGTGGACAAGACCTCAGGCGCCAAGGATGATGTGAGTCCAGAAGAGCAAGGCAA
AGCCAACGAAGGAGCAGAGTTCCAGGCGGAGGATGCCAGCCCACCAGGAGCCACTGTTTGTGTCCAGGAC
GAGCCCAGGTCAGAGGAGCAAGGACAGCAAGAACCAGAGAAGCAAGAAGGCCTGGTAGAAGGGGCAGCCA
GTAAGCCTGAGCCCTGTACTGAGCGAGAGGGTCCCCCAGGGGATGCTACCCTGCTCCTAGCTGAGACCCC
AGCCCCGGAGCAGCCTGTGGAAAGCCAGCCACTGCTCCATCAGGAAGCGTCCAGCACTAACCCTGGTGAC
CACCCTGCACCTACGTATGCCCCTGCCCAGCAGCTTGAGCTGGCTGAGGCCAAAGAAGCTAGTGGTCCCA
AGCAGAAGACGTGCCAGTGTTGTGTGGTCATGTGA

Translation (734 aa):
MALQTPVLSPATPTVMAESALYRQRLEVIAEKRRLQEEIGAARRELEEEKLRVERLKRKSLRERWLMDGA
AEGPERPEEPASKDPQSPEGQAQARIRNLEDSLFSLQSQLQLLQSASTGAQHRPAGRPAWRREGPRPLSQ
SAMEAAPTAPTDVDKRTSLPDAPVGMSPESPSDPREESIAVLPASRPSTEAIGTSSEANGPCPGHSPLPE
QLSLGVSSVTKAKGDGAVEVVWAGLRATENSATGPTDVELEAKVEEVVLEAIGARQGTSSPELPTWVKEG
RGVVEVVWEGLGGRDLDVTGESGRDAEATHTSSRRLQEQFEAETCRKEEGASRDSLEGVGQGGPGVEEGS
FIWVERVALSEDWEEILMEGLEAPQGAGSAGEPEALIGAQPRGGEASWEVEKREVEKVEGIEEKGRAEKL
GAEREDGVAVLPDETQGREENEAEKVERKDSEGPFPAEIATDEEKWEVKTTEGEESLEVEKGGEAEPVTT
EKPLVTEKKPEGSLETERKGSEMPLDQEKDGEGSLDRESKTTEILLDGEIGDKSSLDETKGSKKLLDEKT
GGEGSLDEEAEGSKKLLDREADGIEPFSEVDKTSGAKDDVSPEEQGKANEGAEFQAEDASPPGATVCVQD
EPRSEEQGQQEPEKQEGLVEGAASKPEPCTEREGPPGDATLLLAETPAPEQPVESQPLLHQEASSTNPGD
HPAPTYAPAQQLELAEAKEASGPKQKTCQCCVVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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