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Report for CCDS40404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40404.1 Public Mus musculus 8 Samd1 23 108 98 CCDS HistoryNCBI Gene:666704Re-query CCDS DB by CCDS ID:40404.1Re-query CCDS DB by GeneID:666704See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095228.3 ENSMUSP00000092853.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095228.3Link to Ensembl Protein Viewer:ENSMUSP00000092853.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095228Re-query CCDS DB by Protein ID:ENSMUSP00000092853
Original member Current member NCBI NM_001081415.2 NP_001074884.1 Accepted alive Link to Nucleotide Sequence:NM_001081415.2Link to Protein Sequence:NP_001074884.1Re-query CCDS DB by Nucleotide ID:NM_001081415Re-query CCDS DB by Protein ID:NP_001074884Link to BLAST:NP_001074884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074884.1 519 D3YXK1 519 100% 0 0

Chromosomal Locations for CCDS 40404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83997672 83998565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83998943 83999240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83999324 83999420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83999516 83999627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83999717 83999875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCGGGGCCCCCGGCCCTACCCCCGCCGGAGACGGCGGCGGCCGCCACCACGGCGGCCGCCGCCTCGT
CGTCCGCCGCTTCCCCGCACTACCAAGAGTGGATTCTGGACACCATCGACTCGCTGCGCTCGCGCAAGGC
GCGGCCGGACCTGGAGCGCATCTGCCGGATGGTGCGGCGGCGGCACGGCCCGGAGCCGGAGCGCACGCGC
GCGGAGCTCGAGAAACTGATCCAGCAGCGCGCCGTGCTCCGGGTCAGCTACAAGGGGAGCATCTCGTACC
GCAACGCGGCGCGCGTCCAGCCGCCCCGCCGCGGAGCCACCCCACCCGCCCCGCCGCGCGTCCCCCGCGG
GGGCCCCGCCGCGCCGCCGCCCACGCCCGCCCCGCCGCCCGCGCCCGTCGCCGCCCCGACCCGGGCGCCC
CGCGCGGCCGCCGCCACAGCGCCCCCTTCTCCCGGCCCCGCGCAGCCGGGTCCCCGGGCGCAGCGGGCCG
CGCCCCTGGCCGCGCCGCCACCAGCGCCCGCCGCGCCCCCGGCCGCGGCGCCCCCAGCCGGCCCGCGCCG
TGCACCGCCGCCCGCCGTCGCCGCCCGGGAGCCGCCGGCGCCGCCACAGCAGCAGCAGCCGCCACCGCCG
CAGCCACAGCCGCCGCCGGAGGGGGGCGCGGCGCGGGCGGGCGGCCCGGCGCGGCCCGTGAGCCTGCGGG
AAGTCGTGCGCTACCTCGGGGGCAGTGGCGGCGCCAGCGGCCGCCTCACTCGCGGCCGCGTGCAGGGGCT
GCTGGAAGAGGAAGCGGCGCGAGGCCGTCTGGAGCGCACCCGCCTGGGAGCGCTCGCGCTACCCCGCGGA
GACAGGCCGGGACGGGCGCCGCCGGCCGCTAGCGCACGCGCGGCGCGGAGCAAGAGAGGTGGAGAAGAAC
GGGTGTTTGAGAAAGAAGAGGAAGATGAGGATGAAGACGAGGAGGAGGAGGAGGAGGACAATGTATCTGA
GGGCTCAGAAGTGCCCGAGAGTGACCGCCCCGCAGGTGCTCAGCACCATCAGATTAATGGAGAGCGGGGC
CCTCAGAGTGCTAAGGAGAGGGTCAAGGAGTGGTCGCCCTGTGGACCCTACCAGGGCCAGGATGAAGGAC
GGGGACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCCCGATGACAGCTGTGAATAAAGAAGGGGGATC
AGCTTGTGTTGGAGCAGCTCCAGATTCTCCATCTCCGGTGCCTTTGCCTCCAGGAAAACCAGCTCTACCT
GGGGCTGATGGGACACCTTTTGGCTGTCCTCCCGGGCGCAAGGAGAAGCCGACAGACCCAGTGGAGTGGA
CAGTCATGGATGTGGTGGAATACTTCACTGAGGCGGGCTTCCCAGAGCAGGCCACTGCTTTTCAAGAGCA
GGAAATTGATGGCAAGTCTTTGTTGCTCATGCAACGGACAGATGTGCTCACTGGCCTATCCATTCGCCTG
GGCCCAGCCCTGAAGATCTACGAGCACCACATCAAGGTGCTTCAGCAAGGCCACTTTGAGGATGATGATC
CTGATGGCCTTCTAGGCTGA

Translation (519 aa):
MAGPPALPPPETAAAATTAAAASSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRRRHGPEPERTR
AELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRVPRGGPAAPPPTPAPPPAPVAAPTRAP
RAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAAAPPAGPRRAPPPAVAAREPPAPPQQQQPPPP
QPQPPPEGGAARAGGPARPVSLREVVRYLGGSGGASGRLTRGRVQGLLEEEAARGRLERTRLGALALPRG
DRPGRAPPAASARAARSKRGGEERVFEKEEEDEDEDEEEEEEDNVSEGSEVPESDRPAGAQHHQINGERG
PQSAKERVKEWSPCGPYQGQDEGRGPAPGSCTRQVFPMTAVNKEGGSACVGAAPDSPSPVPLPPGKPALP
GADGTPFGCPPGRKEKPTDPVEWTVMDVVEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRL
GPALKIYEHHIKVLQQGHFEDDDPDGLLG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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