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Report for CCDS40395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40395.1 Public Mus musculus 8 Slc10a7 23 108 98 CCDS HistoryNCBI Gene:76775Re-query CCDS DB by CCDS ID:40395.1Re-query CCDS DB by GeneID:76775See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40395.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034111.9 ENSMUSP00000034111.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034111.9Link to Ensembl Protein Viewer:ENSMUSP00000034111.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034111Re-query CCDS DB by Protein ID:ENSMUSP00000034111
Original member Current member EBI ENSMUST00000211286.1 ENSMUSP00000147724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211286.1Link to Ensembl Protein Viewer:ENSMUSP00000147724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211286Re-query CCDS DB by Protein ID:ENSMUSP00000147724
Original member Current member NCBI NM_029736.2 NP_084012.1 Accepted alive Link to Nucleotide Sequence:NM_029736.2Link to Protein Sequence:NP_084012.1Re-query CCDS DB by Nucleotide ID:NM_029736Re-query CCDS DB by Protein ID:NP_084012Link to BLAST:NP_084012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084012.1 340 Q5PT53-1 340 100% 0 0

Chromosomal Locations for CCDS 40395.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 78509575 78509674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78515586 78515668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78525162 78525298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78531083 78531158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78578719 78578757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78662987 78663022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78686585 78686668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78697166 78697331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78698520 78698571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78706875 78706948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78729618 78729763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78731609 78731638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGAGGCTGCTGGAGAGGGCGAGGAAAGAATGGTTCATGGTCGGGATAGTGGTGGCGATCGGCGCCGCTA
AGCTCGAGCCGTCGGTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATAACTGTGTCCTACATTGCCGT
CGCAACGATATTCTTCAACAGTGGACTGTCATTAAAAACGGAGGAGCTGACCAGCGCACTGGTGCACCTG
AGACTGCATCTTTTCATCCAAATCTTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTCTTTCTTCAGC
TCTTATCAGTCACATCCATCAACGAGTGGCTTTTAAAAGGTCTGCAGACAGTAGGTTGCATGCCACCCCC
TGTGTCTTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAAATGAGGCAGCTGCGATATTTAATTCAGCA
TTTGGAAGTTTTTTGGGCATTGTTGTGACTCCGGTGCTCCTGCTGCTTTTCCTCGGTTCATCCTCTTCGG
TGCCTTTTACATCCATTTTCTCTCAGCTGTTTATGACGGTGGTGGTTCCTCTTGTCATTGGACAGATCGT
CCGACGCTACATCAAGGACTGGCTGGAGAGGAAGAAGCCACCATTTGGTGTGGTCAGCAGTAGCGTGCTA
CTCATGATCATCTACACCACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTGGACAAGTTCAGCC
TCATCCTCATACTGTTCATAATAGTCTCCGTTCAGCTGAGCTTCATGCTTCTGACTTTCATCTTCTCCAC
ACGGAATAACTCGGGGTTCACACCAGCAGACACAGTGGCTATCATCTTCTGCTCCACACACAAGTCCCTC
ACCTTGGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCT
TGCTCATCTACCACCCAGCTCAGATTCTCCTGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGT
GTCCAGGCAGAAGGGAGTGAAGCTGACAAGGCCGACAGTGTGA

Translation (340 aa):
MRLLERARKEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEELTSALVHL
RLHLFIQIFTLAFFPAAIWLFLQLLSVTSINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIFNSA
FGSFLGIVVTPVLLLLFLGSSSSVPFTSIFSQLFMTVVVPLVIGQIVRRYIKDWLERKKPPFGVVSSSVL
LMIIYTTFCDTFSNPNIDLDKFSLILILFIIVSVQLSFMLLTFIFSTRNNSGFTPADTVAIIFCSTHKSL
TLGIPMLKIVFAGHEHLSLISVPLLIYHPAQILLGSVLVPTIKSWMVSRQKGVKLTRPTV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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