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Report for CCDS40391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40391.1 Public Mus musculus 8 Isx 23 108 98 CCDS HistoryNCBI Gene:71597Re-query CCDS DB by CCDS ID:40391.1Re-query CCDS DB by GeneID:71597See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034034.9 ENSMUSP00000034034.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034034.9Link to Ensembl Protein Viewer:ENSMUSP00000034034.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000034034Re-query CCDS DB by Protein ID:ENSMUSP00000034034
Original member NCBI NM_027837.3 NP_082113.2 Updated not alive Link to Nucleotide Sequence:NM_027837.3Link to Protein Sequence:NP_082113.2Re-query CCDS DB by Nucleotide ID:NM_027837Re-query CCDS DB by Protein ID:NP_082113
Current member NCBI NM_027837.4 NP_082113.2 Accepted alive Link to Nucleotide Sequence:NM_027837.4Link to Protein Sequence:NP_082113.2Re-query CCDS DB by Nucleotide ID:NM_027837Re-query CCDS DB by Protein ID:NP_082113Link to BLAST:NP_082113.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082113.2 240 A1A546-1 240 100% 0 0

Chromosomal Locations for CCDS 40391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 74873641 74873857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 74889964 74890115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 74891799 74891915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 74892668 74892904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGGCAGGCCCTACGATCCACAGGGACATGGAGAAGAGTTCAGGATACTGTGAAGCCCCAGAGAATCTGG
GCTTGTCCTTCTCCATTGAGGCAATCCTGAAGAAACCCACAGAAAGAAGAAGTTTGCCCAGACCACAAAG
CATTTGTAAAGAGGACTCCAGGCAGACAACTATCCCAGGTTCCAAGCTGGAGAGGCCCCCACAGGATCAG
CCCCAAGAAGAGAAAAAGAACAAGCGGAGAGTTCGCACTACCTTCACCACAGAGCAGCTACAGGAGCTGG
AGAAGCTCTTCCACTTCACCCATTACCCTGACATCCATGTCCGTTCCCAATTGGCTTCCAGGATTAACCT
GCCTGAAGCTCGAGTACAGATCTGGTTCCAGAATCAGAGAGCCAAGTGGAGGAAGCAGGAGAAGAGTGGG
AACCTCAGTGCCCCACAGCAGCCTGGTGAGGCCGGCTTGGCCCTGCCCTCAAACATGGACGTGTCTGGTC
CTGTGCTGACACCCACTGCTATGACTACATTGGTACCTCCCACAGAATGCTGCCTACTCTCTCAGACTCA
GCTCCCTTCAAGCTGGTTCCCTACACAGATTCCCCTTGTCCCATGGCACCCATGGGACCTACAGCCCCTG
CCTGGCCCTCTCACCCAGCATCCTTGTGTCCCTACCTTCATGTTCCCACCCCTACACCCCAAGTGGGGCA
GCATCTGTGCAACTTCAACATAG

Translation (240 aa):
MAGPTIHRDMEKSSGYCEAPENLGLSFSIEAILKKPTERRSLPRPQSICKEDSRQTTIPGSKLERPPQDQ
PQEEKKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQEKSG
NLSAPQQPGEAGLALPSNMDVSGPVLTPTAMTTLVPPTECCLLSQTQLPSSWFPTQIPLVPWHPWDLQPL
PGPLTQHPCVPTFMFPPLHPKWGSICATST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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