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Report for CCDS40342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40342.1 Public Mus musculus 8 Scrg1 23 108 98 CCDS HistoryNCBI Gene:20284Re-query CCDS DB by CCDS ID:40342.1Re-query CCDS DB by GeneID:20284See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034023.3 ENSMUSP00000034023.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034023.3Link to Ensembl Protein Viewer:ENSMUSP00000034023.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034023Re-query CCDS DB by Protein ID:ENSMUSP00000034023
Original member NCBI NM_009136.3 NP_033162.1 Updated not alive Link to Nucleotide Sequence:NM_009136.3Link to Protein Sequence:NP_033162.1Re-query CCDS DB by Nucleotide ID:NM_009136Re-query CCDS DB by Protein ID:NP_033162
Current member NCBI NM_009136.4 NP_033162.1 Accepted alive Link to Nucleotide Sequence:NM_009136.4Link to Protein Sequence:NP_033162.1Re-query CCDS DB by Nucleotide ID:NM_009136Re-query CCDS DB by Protein ID:NP_033162Link to BLAST:NP_033162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033162.1 98 O88745 98 100% 0 0

Chromosomal Locations for CCDS 40342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 57474317 57474558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57477344 57477398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGATGAAATCTGTGGTACTTGTCATCCTTGGGCTAACTTTGCTGTTAGAAACACAAGCCATGCCTTCAA
GTCGCCTCTCCTGCTACAGAAAGTTGCTAAAGGATCGCAATTGTCACAACCTTCCGGAGGGCAGAGCCGA
CCTGAAGCTGATAGATGCAAATGTCCAGCATCATTTCTGGGATGGGAAGGGATGCGAGATGATCTGCTAC
TGCAACTTCAGCGAACTGCTCTGCTGCCCAAAAGATGTCTTCTTTGGACCAAAGATCTCCTTTGTGATCC
CCTGCAACAACCACTGA

Translation (98 aa):
MMKSVVLVILGLTLLLETQAMPSSRLSCYRKLLKDRNCHNLPEGRADLKLIDANVQHHFWDGKGCEMICY
CNFSELLCCPKDVFFGPKISFVIPCNNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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