NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40297.1 Public Mus musculus 8 Golga7 23 108 98 CCDS HistoryNCBI Gene:57437Re-query CCDS DB by CCDS ID:40297.1Re-query CCDS DB by GeneID:57437See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051094.8 ENSMUSP00000062983.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051094.8Link to Ensembl Protein Viewer:ENSMUSP00000062983.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051094Re-query CCDS DB by Protein ID:ENSMUSP00000062983
Original member Current member EBI ENSMUST00000121783.6 ENSMUSP00000112935.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121783.6Link to Ensembl Protein Viewer:ENSMUSP00000112935.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121783Re-query CCDS DB by Protein ID:ENSMUSP00000112935
Original member Current member NCBI NM_001042484.1 NP_001035949.1 Accepted alive Link to Nucleotide Sequence:NM_001042484.1Link to Protein Sequence:NP_001035949.1Re-query CCDS DB by Nucleotide ID:NM_001042484Re-query CCDS DB by Protein ID:NP_001035949Link to BLAST:NP_001035949.1
Original member Current member NCBI NM_020585.2 NP_065610.2 Accepted alive Link to Nucleotide Sequence:NM_020585.2Link to Protein Sequence:NP_065610.2Re-query CCDS DB by Nucleotide ID:NM_020585Re-query CCDS DB by Protein ID:NP_065610Link to BLAST:NP_065610.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035949.1 137 Q91W53-1 137 100% 0 0
NP_065610.2 137 Q91W53-1 137 100% 0 0

Chromosomal Locations for CCDS 40297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 23244746 23244793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23245863 23245964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23250249 23250401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23256674 23256784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGAGGCCGCAGCAGGCACCGGTGTCCGGGAAGGTGTTCATTCAGCGAGACTACAGCAGCGGCACGCGCT
GCCAGTTCCAGACCAAGTTCCCCGCGGAGCTGGAGAACAGGATTGACAGACAGCAGTTTGAAGAAACAGT
TCGAACTCTAAATAATCTTTATGCAGAAGCAGAGAAACTTGGGGGCCAGTCGTATCTTGAAGGCTGTTTG
GCTTGTTTAACAGCATACACCATCTTCTTATGCATGGAAACTCATTATGAGAAGGTCTTGAAGAAAGTCT
CCAAATACATTCAAGAACAGAATGAGAAGATATATGCTCCCCAAGGCCTCCTCCTAACAGACCCCATTGA
GAGAGGACTTCGAGTTATTGAAATCACCATCTATGAAGACAGAGGTGTGAGCAGTGGAAGATAA

Translation (137 aa):
MRPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCL
ACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVIEITIYEDRGVSSGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH