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Report for CCDS40285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40285.1 Public Mus musculus 8 Defb10 23 108 98 CCDS HistoryNCBI Gene:246085Re-query CCDS DB by CCDS ID:40285.1Re-query CCDS DB by GeneID:246085See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054162.3 ENSMUSP00000061533.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054162.3Link to Ensembl Protein Viewer:ENSMUSP00000061533.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054162Re-query CCDS DB by Protein ID:ENSMUSP00000061533
Original member Current member NCBI NM_139225.1 NP_631971.1 Accepted alive Link to Nucleotide Sequence:NM_139225.1Link to Protein Sequence:NP_631971.1Re-query CCDS DB by Nucleotide ID:NM_139225Re-query CCDS DB by Protein ID:NP_631971Link to BLAST:NP_631971.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631971.1 73 Q8R2I8 73 100% 0 0

Chromosomal Locations for CCDS 40285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21858928 21858988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21861802 21861962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (222 nt):
ATGAGGACTCTCTGCTCTCTGCTGCTGATATGCTGCCTCCTTTTCTCATATACCACCCCAGCTGTTGGAG
ATCTAAAACATCTTATACTCAAAGCACAACTTACACGGTGCTACAAGTTCGGAGGGTTCTGTCACTATAA
TATTTGTCCTGGTAATAGCAGGTTTATGAGTAACTGTCACCCAGAGAATCTCCGCTGTTGCAAGAACATA
AAACAATTTTAA

Translation (73 aa):
MRTLCSLLLICCLLFSYTTPAVGDLKHLILKAQLTRCYKFGGFCHYNICPGNSRFMSNCHPENLRCCKNI
KQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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