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Report for CCDS40235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40235.1 Public Mus musculus 8 Upf3a 23 108 98 CCDS HistoryNCBI Gene:67031Re-query CCDS DB by CCDS ID:40235.1Re-query CCDS DB by GeneID:67031See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043767.8 ENSMUSP00000037354.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043767.8Link to Ensembl Protein Viewer:ENSMUSP00000037354.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043767Re-query CCDS DB by Protein ID:ENSMUSP00000037354
Original member Current member NCBI NM_025924.2 NP_080200.1 Accepted alive Link to Nucleotide Sequence:NM_025924.2Link to Protein Sequence:NP_080200.1Re-query CCDS DB by Nucleotide ID:NM_025924Re-query CCDS DB by Protein ID:NP_080200Link to BLAST:NP_080200.1

Chromosomal Locations for CCDS 40235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13785684 13785884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13786147 13786253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13787365 13787471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13791882 13791980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13792100 13792210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13795440 13795495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13795584 13795739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13796459 13796592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13798177 13798474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCGCTCGGAAGAGGGGGCCGGAGGCTTAGGCGCAGCCCTGGCTGCGCGGGGCCCGAGCTGGAGGGAGA
AACTATCGAGCTCAGAGACCCACTGCCGCCGCGAGTCACCGCGGAAGGAGTCGGCGGCGCCTCCGGCCCC
GACCCTAAGTGAGAGCGGGGCCGGCAAGCCTCGCGAGGAGAAGAGGACAGCCCTGAGCAAGGTGGTCCTC
CGGCGTCTGCCCCCGGGCCTCACCAAAGAGCAGCTGGAAGAGCAACTGCGCCCCCTGCCGGCGCACGATT
ACTTCGAGGTGGTGGCTGCGGACCTCAGCCTTTATCCTCATGTCTACTCCAGAGCATACATTAATTTTAG
GAACCCTGATGACATCCTGCTGTTCAGAGACCGTTTTGACGGCTATATCTTCATTGGCAATAAAGGCCTG
GAGTATCCTGCTGTGGTGGAGTTTGCTCCATTCCAGAAGATTGCCAAAAAGAAGCTGAAGAAAAAAGATG
CCAAGACCGGAAGCATTGAAGATGACCCAGAATATAAACAGTTCCTGGAGTCGTACAGCCTGGAGGAGGA
GAAGACCAGCGCTAGTCCCGAGACGCTGCTGGGAGAGATAGAAGCCAAGACGAGAGAGCTCCTGGCTAGA
AGGACCACCCCTCTTTTGGAATATATTAAAAACAGAAAATTAGAAAAGCAGAGACTCCGGGAAGAAAAGC
GCGAGGAGCGGAGGAGGAGGGAGCTAGAAAAGAAGCGTCTGCGGGAAGAAGAGAAGAGGAAGAGGAGAGA
GGAGGACCGCTGTAAGAGGAAGGAGGCGGAGAGGCACAAGAGAGCGGAGAAGGACGTGAGGATCAAGCTT
CTTAAAAAACTGGAAACGGGAGAGGAAGTGGCCACAGAGAAACCCAAAGAAAGAGGTGAAGCTGTTGGTG
CTGGAGACGAGAAGCAGGAAGACCGGCTGGTAGCGAGCCAGCCAGAGACAGCTGGGGAGAGGCTACAGGA
TACCAGTGATAAAGAGCCAAGGGACAAGAGATCTCGAGAGAAAGACCCTGAAACTTCTAGATGTCATCCG
GACACCTGCAGGAAGCACAGCAGTCACTCAGAGTTTGCCAGGTTCTCCAGAAGGAATGAAGACGAGGCAA
AGTGGGGGAAAGGCTTCGCCCAGGACAGAGGGAAGAAGGGCCAGGATGGCAGTGTCCCCATGGACGTGGC
AGAGAGAAGCGGCAAGGAGCACAAGGAGTATGACAGCCTGGGGCCAAGAAAGGATCGCCTGGGACACAAG
GCCCAGTAG

Translation (422 aa):
MRSEEGAGGLGAALAARGPSWREKLSSSETHCRRESPRKESAAPPAPTLSESGAGKPREEKRTALSKVVL
RRLPPGLTKEQLEEQLRPLPAHDYFEVVAADLSLYPHVYSRAYINFRNPDDILLFRDRFDGYIFIGNKGL
EYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLESYSLEEEKTSASPETLLGEIEAKTRELLAR
RTTPLLEYIKNRKLEKQRLREEKREERRRRELEKKRLREEEKRKRREEDRCKRKEAERHKRAEKDVRIKL
LKKLETGEEVATEKPKERGEAVGAGDEKQEDRLVASQPETAGERLQDTSDKEPRDKRSREKDPETSRCHP
DTCRKHSSHSEFARFSRRNEDEAKWGKGFAQDRGKKGQDGSVPMDVAERSGKEHKEYDSLGPRKDRLGHK
AQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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