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Report for CCDS40201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40201.1 Public Mus musculus 7 Shank2 23 108 98 CCDS HistoryNCBI Gene:210274Re-query CCDS DB by CCDS ID:40201.1Re-query CCDS DB by GeneID:210274See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40201.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146006.2 ENSMUSP00000146440.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146006.2Link to Ensembl Protein Viewer:ENSMUSP00000146440.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146006Re-query CCDS DB by Protein ID:ENSMUSP00000146440
Original member Current member NCBI NM_001081370.3 NP_001074839.3 Accepted alive Link to Nucleotide Sequence:NM_001081370.3Link to Protein Sequence:NP_001074839.3Re-query CCDS DB by Nucleotide ID:NM_001081370Re-query CCDS DB by Protein ID:NP_001074839Link to BLAST:NP_001074839.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074839.3 1262 Q80Z38-3 1262 100% 0 0

Chromosomal Locations for CCDS 40201.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144284969 144285137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144286642 144286766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144395463 144395598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144396351 144396431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144396638 144396646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144398241 144398261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144405330 144405460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144407121 144407232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144408056 144408076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144409462 144411868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144420559 144421135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3789 nt):
ATGATGAGCGTCCCCGGCGGTGGAGCAGCCACCGTGATGATGACCGGTTACAATAATGGTCGCTATCCCC
GGAATTCTCTCTACAGTGACTGCATTATTGAGGACAAGACGGTGGTCCTGCAAAAGAAGGACAACGAGGG
CTTTGGATTTGTGCTCCGAGGGGCAAAAGCCGATACCCCCATTGAGGAATTCACACCCACGCCAGCATTT
CCAGCCCTGCAGTACCTGGAGTCCGTGGATGAAGGTGGGGTGGCATGGCAAGCCGGACTAAGGACCGGGG
ACTTCTTGATTGAGGTTAACAATGAAAATGTCGTCAAGGTGGGCCACAGGCAGGTGGTGAACATGATCCG
CCAGGGAGGGAATCACCTCATCCTTAAGGTCGTCACGGTGACCAGGAATCTAGACCCTGATGATACAGCC
AGAAAGAAAGCTCCCCCACCTCCAAAGCGGGCTCCGACCACGGCCCTCACCCTGCGTTCCAAGTCCATGA
CAGCGGAGTTGGAGGAACTCGTGGACAAAGCCTCAGTCCGGAAGAAGAAGGATAAACCGGAAGAGATAGT
CCCAGCCTCCAAGCCCTCCAGGACTGCAGAGAACGTGGCCATCGAATCCAGGGTGGCGACCATCAAGCAG
CGGCCCACAAGCCGGTGCTTCCCAGCTGCCTCTGATGTGAATTCCGTGTACGAGCGCCAAGGGATTGCTG
TAATGACGCCCACGGTCCCTGGGAGCCCGAAAGGCCCATTTCTGGGCCTCCCTCGAGGTACGATGCGAAG
GCAGAAATCGATAGACAGCAGAATCTTTCTATCAGGGATAACAGAGGAAGAGCGGCAGTTTCTGGCTCCC
CCAATGCTGAAGTTCACCCGAAGCTTGTCCATGCCAGACACTTCTGAGGACATCCCCCCTCCGCCACAGT
CTGTGCCCCCCTCTCCCCCTCCTCCTTCCCCCACCACATACAACTGTCCCAGGTCCCCGACTCCAAGAGT
CTATGGGACAATTAAGCCCGCGTTCAATCAGAACCCCGTCGTCGCCAAGGTGCCCCCAGCCACCAGGTCT
GACACTGTGGCCACCATGATGCGGGAAAAGGGGATGTTCTACAGGAGAGAGCTGGACAGATTTTCCCTGG
ACTCAGAAGACGTCTACAGCCGCAGCCCCGCCCCACAGGCCGCCTTCCGCACCAAGCGGGGACAGATGCC
TGAGAACCCGTACTCAGAGGTGGGAAAGATAGCCAGCAAGGCCGTCTATGTCCCTGCCAAGCCAGCCAGG
CGGAAGGGCGTGCTGGTAAAGCAGTCCAACGTGGAGGATAGCCCCGAGAAGACGTGCTCCATACCCATCC
CAACCATCATCGTCAAGGAACCCTCCACCAGCAGCAGCGGCAAGAGCAGCCAGGGGAGCAGCATGGAGAT
TGACCCCCAGGCCACCGAGCCCGGCCAGCTGCGGCCAGATGACAGCCTCACCGTCAGCAGCCCCTTTGCT
GCGGCCATCGCTGGGGCTGTGCGTGACCGGGAGAAGCGTCTGGAAGCCAGGAGGAATTCCCCAGCCTTCC
TCTCCACCGACCTGGGAGATGAGGACGTGGGTCTGGGGCCGCCTGCTCCCCGGATGCAGGCCTCCAAGTT
CCCAGAGGAGGGTGGGTTTGGTGACGAGGATGAGACGGAACAACCGCTGTTGCCTACCCCCGGGGCAGCA
CCCAGGGAGCTGGAGAATCACTTCCTAGGTGGTGGTGAGGCTGGTGCTCAGGGGGAGGCTGGGGGACCCC
TGAGTTCCACATCCAAAGCCAAGGGGCCTGAGAGTGGCCCAGCAGCCCCCCTCAAGAGCAGCAGCCCAGC
CGGCCCTGAGAATTACGTGCACCCACTCACAGGGCGGCTGCTTGACCCCAGCTCCCCACTGGCCCTGGCA
CTCTCAGCCAGGGACCGAGCCATGCAGGAGTCCCAGCAGGGGCACAAAGGAGAGGCCCCCAAGGCTGACC
TTAACAAGCCTCTCTACATCGATACCAAAATGCGGCCCAGCGTGGAGTCCGGCTTTCCTCCAGTCACCAG
ACAGAACACCAGGGGTCCCCTGCGACGGCAAGAGACAGAGAACAAGTACGAGACAGACCTGGGCAAGGAC
CGGAGGGCGGACGACAAGAAGAACATGCTGATCAACATCGTGGACACTGCCCAGCAGAAGTCAGCTGGCC
TACTGATGGTGCACACAGTGGACGTCCCCATGGCCGGGCCACCCCTGGAGGAAGAGGAGGACAGAGAGGA
TGGGGATACAAAGCCAGACCACTCACCCTCCACAGTGCCAGAAGGCGTTCCCAAAACCGAAGGTGCTTTA
CAGATCTCCGCTGCCCCGGAGCCCGCCGTCGCGCCCGGCAGGACCATCGTGGCGGCGGGCTCCGTGGAAG
AGGCGGTGATTCTGCCATTCCGCATCCCCCCTCCCCCTCTGGCATCCGTGGACTTGGATGAGGACTTTCT
TTTCACAGAACCGTTGCCTCCCCCCCTGGAATTCGCCAATAGTTTTGATATCCCCGATGACCGGGCAGCT
TCAGTTCCCGCTCTGGCTGACCTGGTCAAGCAGAAGAAAAACGACACCTCTCAGCCCCCTACGTTGAACT
CCAGCCAACCAGCCAACTCCACAGACAGTAAGAAGCCAGCCGGTATCTCGAACTGTCTGCCCTCCTCGTT
CCTGCCACCCCCCGAAAGTTTCGATGCAGTCACCGACTCGGGGATTGAGGAGGTGGACAGCCGGAGTAGC
AGCGACCACCACCTGGAGACTACCAGCACCATCTCCACGGTGTCCAGCATCTCCACGCTGTCCTCAGAGG
GCGGCGAGAGCATGGACACCTGCACAGTCTATGCAGACGGGCAAGCCTTTGTGGTTGACAAGCCCCCAGT
ACCTCCAAAGCCAAAAATGAAGCCCATCGTTCACAAGAGCAACGCACTTTACCAAGACACGCTCCCAGAA
GAGGACACGGATGGCTTTGTGATCCCCCCACCTGCACCCCCGCCCCCGCCGGGCAGCGCCCAGGCCGGTG
TGGCGAAGGTCATCCAGCCAAGGACCTCCAAGTTGTGGGGTGACGTTCCAGAGGTCAAAAGCCCAATTCT
CTCAGGCCCAAAGGCAAATGTCATTAGTGAGCTAAACTCCATTCTGCAGCAGATGAACAGGGGGAAATCG
GTCAAGCCCGGGGAAGGGCTGGAGCTGCCGGTGGGAGCCAAGTCGGCCAACCTCGCTCCAAGAAGCCCGG
AGGTCATGAGCACCGTCTCAGGTACACGGAGCACGACGGTCACCTTCACTGTCCGCCCTGGCACCTCCCA
GCCCATCACCCTGCAGAGCCGGCCCCCCGACTATGAAAGCAGAACCTCAGGACCTAGACGCGCCCCAAGC
CCTGTGGTTTCACCAACGGAATTGAGCAAAGAGATCCTGCCCACCCCTCCCCCTCCGTCCGCCACTGCAG
CCTCTCCCTCCCCCACACTCTCAGATGTCTTTAGCCTTCCGAGCCAGTCCCCTGCAGGGGACCTCTTTGG
CTTGAACCCAGCAGGACGGAGCAGGTCACCATCTCCTTCAATATTGCAACAGCCAATCTCAAATAAGCCT
TTTACAACTAAGCCTGTCCACCTGTGGACGAAACCAGATGTGGCAGACTGGCTGGAAAGTCTGAACTTGG
GTGAACACAAGGAGACGTTCATGGACAATGAGATTGACGGCAGCCACCTGCCAAACCTTCAGAAGGAAGA
CTTGATAGATCTTGGGGTGACTCGAGTTGGGCATAGGATGAACATAGAAAGGGCTTTGAAACAGCTGCTG
GACAGATAA

Translation (1262 aa):
MMSVPGGGAATVMMTGYNNGRYPRNSLYSDCIIEDKTVVLQKKDNEGFGFVLRGAKADTPIEEFTPTPAF
PALQYLESVDEGGVAWQAGLRTGDFLIEVNNENVVKVGHRQVVNMIRQGGNHLILKVVTVTRNLDPDDTA
RKKAPPPPKRAPTTALTLRSKSMTAELEELVDKASVRKKKDKPEEIVPASKPSRTAENVAIESRVATIKQ
RPTSRCFPAASDVNSVYERQGIAVMTPTVPGSPKGPFLGLPRGTMRRQKSIDSRIFLSGITEEERQFLAP
PMLKFTRSLSMPDTSEDIPPPPQSVPPSPPPPSPTTYNCPRSPTPRVYGTIKPAFNQNPVVAKVPPATRS
DTVATMMREKGMFYRRELDRFSLDSEDVYSRSPAPQAAFRTKRGQMPENPYSEVGKIASKAVYVPAKPAR
RKGVLVKQSNVEDSPEKTCSIPIPTIIVKEPSTSSSGKSSQGSSMEIDPQATEPGQLRPDDSLTVSSPFA
AAIAGAVRDREKRLEARRNSPAFLSTDLGDEDVGLGPPAPRMQASKFPEEGGFGDEDETEQPLLPTPGAA
PRELENHFLGGGEAGAQGEAGGPLSSTSKAKGPESGPAAPLKSSSPAGPENYVHPLTGRLLDPSSPLALA
LSARDRAMQESQQGHKGEAPKADLNKPLYIDTKMRPSVESGFPPVTRQNTRGPLRRQETENKYETDLGKD
RRADDKKNMLINIVDTAQQKSAGLLMVHTVDVPMAGPPLEEEEDREDGDTKPDHSPSTVPEGVPKTEGAL
QISAAPEPAVAPGRTIVAAGSVEEAVILPFRIPPPPLASVDLDEDFLFTEPLPPPLEFANSFDIPDDRAA
SVPALADLVKQKKNDTSQPPTLNSSQPANSTDSKKPAGISNCLPSSFLPPPESFDAVTDSGIEEVDSRSS
SDHHLETTSTISTVSSISTLSSEGGESMDTCTVYADGQAFVVDKPPVPPKPKMKPIVHKSNALYQDTLPE
EDTDGFVIPPPAPPPPPGSAQAGVAKVIQPRTSKLWGDVPEVKSPILSGPKANVISELNSILQQMNRGKS
VKPGEGLELPVGAKSANLAPRSPEVMSTVSGTRSTTVTFTVRPGTSQPITLQSRPPDYESRTSGPRRAPS
PVVSPTELSKEILPTPPPPSATAASPSPTLSDVFSLPSQSPAGDLFGLNPAGRSRSPSPSILQQPISNKP
FTTKPVHLWTKPDVADWLESLNLGEHKETFMDNEIDGSHLPNLQKEDLIDLGVTRVGHRMNIERALKQLL
DR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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