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Report for CCDS40184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40184.1 Public Mus musculus 7 Sct 23 108 98 CCDS HistoryNCBI Gene:20287Re-query CCDS DB by CCDS ID:40184.1Re-query CCDS DB by GeneID:20287See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40184.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167790.2 ENSMUSP00000128729.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167790.2Link to Ensembl Protein Viewer:ENSMUSP00000128729.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167790Re-query CCDS DB by Protein ID:ENSMUSP00000128729
Original member NCBI NM_011328.3 NP_035458.1 Updated not alive Link to Nucleotide Sequence:NM_011328.3Link to Protein Sequence:NP_035458.1Re-query CCDS DB by Nucleotide ID:NM_011328Re-query CCDS DB by Protein ID:NP_035458
Current member NCBI NM_011328.4 NP_035458.1 Accepted alive Link to Nucleotide Sequence:NM_011328.4Link to Protein Sequence:NP_035458.1Re-query CCDS DB by Nucleotide ID:NM_011328Re-query CCDS DB by Protein ID:NP_035458Link to BLAST:NP_035458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035458.1 133 Q08535 133 100% 0 0

Chromosomal Locations for CCDS 40184.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141278410 141278521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141278618 141278722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141278833 141278934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141279016 141279098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGGAGCCTCCGCTGCCCACGCCGATGCTACTGCTGTTGCTGCTGCTGCTCTCCAGTTCCGCCGCGCTCC
CTGCACCTCCCAGGACCCCAAGACACTCAGACGGAATGTTCACCAGCGAGCTCAGCCGCTTGCAGGACAG
TGCCAGGCTGCAGCGCCTGCTGCAGGGTCTGGTGGGGAAGCGCAGCGAGCAGGACACAGAAAATATCCCA
GAGAACAGCCTGGCCCGGTCCAAGCCCTTAGAGGACCAGCTCTGCTTGCTGTGGTCGAACACTCAGACCC
TACAGGACTGGCTTCTGCCCAGGCTGTCCCTGGATGGGTCCCTGTCTCTCTGGCTGCCTCCTGGACCAAG
GTCTGCTGTTGATCGTTCAGAGTGGACTGAAACAACCAGGCCACCCAGATGA

Translation (133 aa):
MEPPLPTPMLLLLLLLLSSSAALPAPPRTPRHSDGMFTSELSRLQDSARLQRLLQGLVGKRSEQDTENIP
ENSLARSKPLEDQLCLLWSNTQTLQDWLLPRLSLDGSLSLWLPPGPRSAVDRSEWTETTRPPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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