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Report for CCDS40146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40146.1 Public Mus musculus 7 Stx1b 23 108 98 CCDS HistoryNCBI Gene:56216Re-query CCDS DB by CCDS ID:40146.1Re-query CCDS DB by GeneID:56216See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106267.4 ENSMUSP00000101874.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106267.4Link to Ensembl Protein Viewer:ENSMUSP00000101874.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106267Re-query CCDS DB by Protein ID:ENSMUSP00000101874
Original member Current member NCBI NM_024414.2 NP_077725.1 Accepted alive Link to Nucleotide Sequence:NM_024414.2Link to Protein Sequence:NP_077725.1Re-query CCDS DB by Nucleotide ID:NM_024414Re-query CCDS DB by Protein ID:NP_077725Link to BLAST:NP_077725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077725.1 288 P61264 288 100% 0 0

Chromosomal Locations for CCDS 40146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127807309 127807389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127807656 127807766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127807847 127807984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127810655 127810728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127810900 127811008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127811163 127811236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127814913 127814987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127815064 127815163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127815346 127815420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127824260 127824289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGAAGGATCGGACTCAGGAGCTGCGGAGTGCGAAAGACAGTGATGATGAAGAGGAGGTGGTCCACGTGG
ATCGAGACCACTTTATGGATGAGTTCTTCGAGCAGGTGGAAGAGATCCGAGGCTGCATCGAGAAACTGTC
TGAGGATGTGGAGCAAGTGAAGAAACAGCACAGCGCCATTCTTGCCGCCCCCAACCCCGATGAGAAGACT
AAACAGGAGTTGGAGGACCTCACGGCAGACATCAAAAAGACGGCAAACAAGGTCCGGTCCAAGTTGAAAG
CGATCGAGCAAAGCATTGAGCAGGAAGAGGGGCTGAATCGTTCCTCTGCGGACCTGCGCATCCGTAAGAC
CCAGCACTCCACACTCTCACGGAAGTTCGTGGAGGTAATGACCGAATATAATGCAACTCAGTCCAAGTAC
CGGGACCGCTGCAAGGACCGAATCCAGAGGCAGCTGGAGATCACTGGCAGGACTACTACCAATGAAGAAC
TAGAAGACATGTTGGAAAGCGGGAAGCTGGCCATCTTCACTGATGATATCAAAATGGACTCGCAGATGAC
AAAGCAAGCTCTGAATGAGATCGAGACAAGGCACAATGAGATCATCAAACTGGAAACCAGCATTCGAGAG
CTGCACGACATGTTTGTGGACATGGCCATGCTCGTAGAGAGCCAGGGTGAGATGATCGACCGAATTGAGT
ACAACGTGGAACATTCCGTGGACTACGTGGAACGAGCCGTGTCTGACACCAAGAAAGCTGTGAAGTATCA
GAGCAAGGCCAGGAGGAAGAAAATTATGATCATCATTTGCTGTGTGGTGCTGGGGGTGGTCTTGGCGTCA
TCCATTGGGGGGACACTGGGCTTGTAG

Translation (288 aa):
MKDRTQELRSAKDSDDEEEVVHVDRDHFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKT
KQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKY
RDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAIFTDDIKMDSQMTKQALNEIETRHNEIIKLETSIRE
LHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVVLGVVLAS
SIGGTLGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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