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Report for CCDS40143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40143.1 Public Mus musculus 7 Zfp747l1 23 108 98 CCDS HistoryNCBI Gene:78921Re-query CCDS DB by CCDS ID:40143.1Re-query CCDS DB by GeneID:78921See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049052.3 ENSMUSP00000038195.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049052.3Link to Ensembl Protein Viewer:ENSMUSP00000038195.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000049052Re-query CCDS DB by Protein ID:ENSMUSP00000038195
Original member Current member NCBI NM_030226.3 NP_084502.2 Accepted alive Link to Nucleotide Sequence:NM_030226.3Link to Protein Sequence:NP_084502.2Re-query CCDS DB by Nucleotide ID:NM_030226Re-query CCDS DB by Protein ID:NP_084502Link to BLAST:NP_084502.2

Chromosomal Locations for CCDS 40143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127384297 127385630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127386520 127386633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127386774 127386957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGCGCAGCGGATTGCACTGGACGAGGCCTCGGTACCGCCTGTGTTCTGTAAACCCTGGGCTGTGAACT
TCGCGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGAGGTATCTGCGGCCGGCGCAGAGAGCCCTGTA
CCGAGAGGTGATGCGCGAGACCTACGGTCTCCTGGCCTATCTCGACGTCGGATGCGCCAAACCAGCACTC
ATCTGCTGGGTGGAGGAAGAGTCCGAAGTGTGGGGACCCTGTGCCCAGGATCCAGAGGTGGCCATGTGCA
GGACAGAAGTTCACTCAGATTGCAGGCACGAGAAGGAAAGGAAGAGACCAAGGGAAGAGACTGAAGCAAT
GCAGAAGACATTTTCTCCAGAACCTGGGCAGAAGGAGCCACAACTCTCATTTGCTGTCTCCCCTAGTGGT
GTTCAAGCCACGGTCCTAAGGGCAGACAAGTGTCACGACTGCAATTTGTGTGGGAAGAGTTTTGCCCGGC
GGTCCACGTTGGAGGCACACATGTACACTCACACAGGTGAAAAGCCGTTTCAGTGCCCAGACTGCAACAA
ACGATTTGGCCGGTATTCTTCCCTGAGCACTCACCGAGCCATACACCGAGGGGAACGACCGCATCAGTGT
CCTGACTGTGGGAAGAGTTTTACCCAGCGGTCCAAACTGGTGGCACACATGTACACTCACACAGGTGAAA
AGCCGTTTCAGTGCCCAGACTGCAACAAACGCTTCAGCCGGCCTTCTTCCCTGAGCACTCACCGAGCCAT
ACACCGAGGGGAACGGCTGCATCAGTGTCCTGACTGTGGGAAGAGTTTTACCCAGCGGTGCACTTTGGTG
GCACACATGTACTCTCACACAGGTGAAAAGCCGTTTCAGTGCCCAGACTGCAACAAACGCTTCGGCCGGT
ATTCTTCCCTGAGCTCGCACCGAGCCATACACCGAGGGGAACGGCCACACCAGTGTCCTGACTGTGGGAA
GGGTTTTACCCAGCGGTGCACATTGGTGGATCACATGTACTCTCACACAGGCGAAAAGTCATTCAATTGC
CCTGATTGCTGCAAGTCCTTTGGTCGGCCATCTTCCCTGAGCAGGCACCGGGCCATACACCGAATGGAGC
AGCCTCATCGCTGCTCTCACTGTGGCAGGACTTTCACACGGCGCTCTTCACTCACCAGCCATCTCCGTGT
CCACACTGGGGAGAAGCCTTACTGTTGTGCTGATTGTGGACGCTGCTTCAGCCAGAGATCTGCGTTCCGT
GAGCACCAGCGAGTGGTACACAGCGGTGTGACCCCCTTTTCTTGCACTCACTGTGGCAGTGCCTTTGCGG
ATTCCAAATATCTTCGGCGGCACATGCGCATCCATACAGGTGAAAAGCCTTATTCATGCCCTGATTGTGG
TCGCTGCTTTCGCCAGAGCTCTGAAATTCCAGCCCATAGGAGGACCCACACTGGCGAGCGTCCTTACCCC
TGCCCTCAATGTGGCAGGCAGTTTCGCACAAAGTCAGCTATGACAAGCCACCAGTGGGTCCATAGACCAG
GAGCTAAAGGCCATAAGGACAAAAAAGCCAATCAGTTATCTATATCCCTGGACCCTAGACAAGAGGACCC
GGATCCACCTGTGGGCTTCTAG

Translation (543 aa):
MAQRIALDEASVPPVFCKPWAVNFADVAVYFSPEEWRYLRPAQRALYREVMRETYGLLAYLDVGCAKPAL
ICWVEEESEVWGPCAQDPEVAMCRTEVHSDCRHEKERKRPREETEAMQKTFSPEPGQKEPQLSFAVSPSG
VQATVLRADKCHDCNLCGKSFARRSTLEAHMYTHTGEKPFQCPDCNKRFGRYSSLSTHRAIHRGERPHQC
PDCGKSFTQRSKLVAHMYTHTGEKPFQCPDCNKRFSRPSSLSTHRAIHRGERLHQCPDCGKSFTQRCTLV
AHMYSHTGEKPFQCPDCNKRFGRYSSLSSHRAIHRGERPHQCPDCGKGFTQRCTLVDHMYSHTGEKSFNC
PDCCKSFGRPSSLSRHRAIHRMEQPHRCSHCGRTFTRRSSLTSHLRVHTGEKPYCCADCGRCFSQRSAFR
EHQRVVHSGVTPFSCTHCGSAFADSKYLRRHMRIHTGEKPYSCPDCGRCFRQSSEIPAHRRTHTGERPYP
CPQCGRQFRTKSAMTSHQWVHRPGAKGHKDKKANQLSISLDPRQEDPDPPVGF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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