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Report for CCDS40105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40105.1 Public Mus musculus 7 Iqck 23 108 98 CCDS HistoryNCBI Gene:434232Re-query CCDS DB by CCDS ID:40105.1Re-query CCDS DB by GeneID:434232See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106547.1 ENSMUSP00000102157.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106547.1Link to Ensembl Protein Viewer:ENSMUSP00000102157.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106547Re-query CCDS DB by Protein ID:ENSMUSP00000102157
Original member Current member NCBI NM_001081446.2 NP_001074915.1 Accepted alive Link to Nucleotide Sequence:NM_001081446.2Link to Protein Sequence:NP_001074915.1Re-query CCDS DB by Nucleotide ID:NM_001081446Re-query CCDS DB by Protein ID:NP_001074915Link to BLAST:NP_001074915.1

Chromosomal Locations for CCDS 40105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118855775 118855961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118872821 118872885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118876242 118876371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118877600 118877697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118899630 118899682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118899809 118899886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118915511 118915595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118941585 118941696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118971435 118971490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCGGCGCCGAGACTTGTATCCAGCCGCAGCGTGCTGCGTGAGGAGGCGAGCGGCTCCGCGGATTCGC
CGATCACTACGCGCACGCCGGTGCCCGCAGTGTCGCCCGGGTCTCCCGAAGTGCTCGTGTCACCCCCGCA
GGTCGTCGAGCCGCCGGGGAAGAGCCTATGGGATCAGATCTGCGAGGAGTATGAAGCTGAGCAGCCGACC
TTTCCAGAAGGCTATAAAGTGAAGCAGGAAGCTGCGGTTACAGTCACGCCCTTGGAGGAATTGGTTCCTC
ATGGCTTCAACATGGAGCACTACCTCCCAATACACCAGTTCCCAGCGATGCCTCCTGTGCCCTGTCCTCC
CAAGAAGGCAGAAACAGTCGAGCCCAAGACCTGTTCACCCAGAGATTATCTGGAAATGTTCATCTTTCCA
GTTCTGCTCCCTGGAATGGCCAGCCTGCTTCACCAAGCAAAGAGAGAAAAATGTTTTGAGAGGAAGAGAA
CCAAATTCATTGCCTGCGATTTCCTGACTGAGTGGCTGTACAACCAGAATCCGAAGAGGGCAGGGGAGTC
ATTCACAGAATTCTTCTCCATTCCATTTGTGGAAGACTGGCTCAAGGACCACCCGCGGCCACCAATTCCA
CTCTCCCTGCTACTGACAGAAGAAGAAGCAGCAGTCAGGATCCAGGCCTTCTGGAGAGCCTATCTGGTTC
GCTGTGACCCTGAGATTCAGGAGCTGCGGCAGTGGCAGAAGAAGCTGCGCGAGGACAAGCACATCCGCCA
GCGGGTGAAGATCTTCTGGGCCAAGCAGGAGCAGAAAATGAAATGTAAAATGGAGGACGAGGAAGCACCG
GCTGCCTCAGCACCATATCCTTAG

Translation (287 aa):
MAAPRLVSSRSVLREEASGSADSPITTRTPVPAVSPGSPEVLVSPPQVVEPPGKSLWDQICEEYEAEQPT
FPEGYKVKQEAAVTVTPLEELVPHGFNMEHYLPIHQFPAMPPVPCPPKKAETVEPKTCSPRDYLEMFIFP
VLLPGMASLLHQAKREKCFERKRTKFIACDFLTEWLYNQNPKRAGESFTEFFSIPFVEDWLKDHPRPPIP
LSLLLTEEEAAVRIQAFWRAYLVRCDPEIQELRQWQKKLREDKHIRQRVKIFWAKQEQKMKCKMEDEEAP
AASAPYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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