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Report for CCDS40084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40084.1 Public Mus musculus 7 BC051019 23 108 98 CCDS HistoryNCBI Gene:57355Re-query CCDS DB by CCDS ID:40084.1Re-query CCDS DB by GeneID:57355See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033334.4 ENSMUSP00000033334.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033334.4Link to Ensembl Protein Viewer:ENSMUSP00000033334.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033334Re-query CCDS DB by Protein ID:ENSMUSP00000033334
Original member Current member EBI ENSMUST00000106735.8 ENSMUSP00000102346.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106735.8Link to Ensembl Protein Viewer:ENSMUSP00000102346.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106735Re-query CCDS DB by Protein ID:ENSMUSP00000102346
Original member Current member NCBI NM_001040700.2 NP_001035790.1 Accepted alive Link to Nucleotide Sequence:NM_001040700.2Link to Protein Sequence:NP_001035790.1Re-query CCDS DB by Nucleotide ID:NM_001040700Re-query CCDS DB by Protein ID:NP_001035790Link to BLAST:NP_001035790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035790.1 402 Q9JJR6 402 100% 0 0

Chromosomal Locations for CCDS 40084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109712528 109712535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109715846 109716487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109717925 109718159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109720531 109720687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109723119 109723285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGCAGCCCTCTGCCAGTCCTGGGCTGCCACTGCCCAAATACTGCAGTGTGGCCACAACCGTGAAAGCCC
CTGACCTGCATGGTGCTGTGCCGCCCTGGGACATGTCCTTCACCTGTCCCTTTGCCACGCAAGCACCCTG
GCTGGCCACGCACTGCACATTCACCAGGTGCACTGCCTGTTGCCCATGTCTTCACACTGTTGATCGGCCA
TGGCCGGGGCTCCGCTGGCTGGGAAGAGTCGGAGCTGCGGGCGGCTCCTGGGTCCTGGCCAGAAAGGAAC
CGGATGGCTTTTATTATCTGGCTCAGATAAAGGCTGCTCCAGAGCTGGAGAAGCGGGGGGCCCTGGTTGT
GGAATTTGAGGCTCCCCTTGTCACAGGCCTAGAGCTGCCAGCCCAGCAGCAGAGGGTGGTATTTCCAGAG
GATGTTATTCAGTTTTCACCATCTGTGCCACACTCACTGCAGCTGGGTGACAAGGTGTTGGCACCCTGGG
AACCGGGGCAGCAGCGGTATGGCCCCGGCACTGTTCTAGTGGGCTTGAAGAAGCAAAAAGGACAAAGAGC
ATCTAAAGAAAAAGAAATCACTGTTCATTTCTGGAATGGCAAGACAACTAAGGTGCCTCTAGGCAGCGTC
AGGTGGGTGCCCCCCACGGTCTGGAAGAAGGCTGTGGAAAGACTACAAGCACCTCATACCAGGGACTGCC
ACAGTTCTTGTCTCTGGGTACCTCACTGCTCTCAGCTGGGACCCCGTGCTGGATGCACCACACACAGGCA
TCCTCTGGACTCTTCCTTCTTATGCCCTCCCTGCCTCTCCTGTGCCTGCTGCCAGCTTCAGTGCCAGAGC
AGCTGCCCTTTGGTGGGGCCGAGCTGGTGGCCTCTAACTAGGACTTCAGAGCTCACAACCAGAAAACTCC
CGGAGCCAGAGGTGAAGCCCACAGCTCAGCTTTTGCCCCTACAAGGTCCTAAGGAGGAGCCGGTGGCAGA
GCTCAGCTACAATATGTTCTCCTCCTCCTCCTCCTCTTCCGAGGAAGAAAATTCAGAGAGTCATCTGGAG
ATGGGGCTGCCTCTGAGACAGATGGTAAGCAGGGCAGTCAACACTGACCCCATCCTTTCTGAGACGACAT
CTCTGCAGCAGTACAGCCCCCACAAGCCCGAGTGGAGGTACTGGAGGAGAAATGGGCCTGAACCACCGCC
TGGAAAGCCAGGACGTTAA

Translation (402 aa):
MQPSASPGLPLPKYCSVATTVKAPDLHGAVPPWDMSFTCPFATQAPWLATHCTFTRCTACCPCLHTVDRP
WPGLRWLGRVGAAGGSWVLARKEPDGFYYLAQIKAAPELEKRGALVVEFEAPLVTGLELPAQQQRVVFPE
DVIQFSPSVPHSLQLGDKVLAPWEPGQQRYGPGTVLVGLKKQKGQRASKEKEITVHFWNGKTTKVPLGSV
RWVPPTVWKKAVERLQAPHTRDCHSSCLWVPHCSQLGPRAGCTTHRHPLDSSFLCPPCLSCACCQLQCQS
SCPLVGPSWWPLTRTSELTTRKLPEPEVKPTAQLLPLQGPKEEPVAELSYNMFSSSSSSSEEENSESHLE
MGLPLRQMVSRAVNTDPILSETTSLQQYSPHKPEWRYWRRNGPEPPPGKPGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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