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Report for CCDS39988.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39988.2 Public Mus musculus 7 Aen 23 108 98 CCDS HistoryNCBI Gene:68048Re-query CCDS DB by CCDS ID:39988.2Re-query CCDS DB by GeneID:68048See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 39988.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39988.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107423.1 ENSMUSP00000103046.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107423.1Link to Ensembl Protein Viewer:ENSMUSP00000103046.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107423Re-query CCDS DB by Protein ID:ENSMUSP00000103046
Original member Current member EBI ENSMUST00000107425.7 ENSMUSP00000103048.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107425.7Link to Ensembl Protein Viewer:ENSMUSP00000103048.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107425Re-query CCDS DB by Protein ID:ENSMUSP00000103048
Original member Current member NCBI NM_001360709.1 NP_001347638.1 Accepted alive Link to Nucleotide Sequence:NM_001360709.1Link to Protein Sequence:NP_001347638.1Re-query CCDS DB by Nucleotide ID:NM_001360709Re-query CCDS DB by Protein ID:NP_001347638Link to BLAST:NP_001347638.1
Original member Current member NCBI NM_026531.5 NP_080807.3 Accepted alive Link to Nucleotide Sequence:NM_026531.5Link to Protein Sequence:NP_080807.3Re-query CCDS DB by Nucleotide ID:NM_026531Re-query CCDS DB by Protein ID:NP_080807Link to BLAST:NP_080807.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347638.1 336 Q9CZI9-1 336 100% 0 0
NP_080807.3 336 Q9CZI9-1 336 100% 0 0

Chromosomal Locations for CCDS 39988.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 78902294 78902830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78905843 78906043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 78907144 78907416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGTGGCAGGGGAAGTCCCCGAGTCTACTCAGTGTCCATCTCTCACCAGCCTGAATACCAAGGATGTGG
TTCGGAGAAGACACAAGAGGAGAAGCCGGCAGCACCAGCGATTCATGGCCCGCAAGGCCTTGCTTCAGGA
GCAGGAGCTGTTGAGCACGGCACCAGGGCCAGGTCTCTGCCTTCTGCCTTCACCATCACAGATGCCAGCG
GTCACAGAGGCTTCGGACAGCAGGAGGCAACGTCCCAAGGCCAGGTCCGGCAGCAATGGCCTGTGCAGCA
AAAAGTCTGTCCCCAGAGAAGCTCCAAGACCTGGGCCCATCAAGTGTGTGGCCATTGACTGTGAGATGGT
GGGTACGGGCCCCCAAGGACGGGTGAGCGAGCTAGCCCGCTGCTCTGTGGTGAGCTACAGTGGTGACGTT
CTCTATGACAAATACATCCGGCCTGAAATGCCCATTGTGGACTATCGCACCCGCTGGAGTGGCATCACCC
GCCAGCACATGCACAAGGCTATCCCCTTTCAGGTGGCCCAGAAGGAGATCCTTAAGCTGTTGAAGGGCAA
GGTGGTGGTGGGGCACGCACTGCACAATGACTTCCAGGCCCTGAAGTACGTCCACCCTCGGAGCCAGACC
CGGGATACCACTTATGTCCCAAACCTGCTCAGCCAGCCCAGCTCCCTTATCCGAACTCGGGTCTCTCTTA
AGGACCTGGCCTTGAACCTGCTGCACAAGAAGATCCAGGTCGGTCACCAGGGCCACTCATCTGTGGAAGA
TGCCATGACAGCCATGGAGTTGTACCAGCTGGTGGAGGTGCAGTGGGAGCAGCAAGTGGCCAGCTCTGCC
CAGGCCCCTGCTGAGGACAGGGGGCCCGACAGCAGCACTGACGTGGAGCAGTACATGGACGACCAGTACT
GGCCCGAGGACCTGACCCAGAGCACCGGGGCCGAGACAAATGGAGGCCCAGATAGACAGGAGGGAGAGGA
AGGGCAGGGAGCCAGGAGTGCTCCTCCCTAG

Translation (336 aa):
MVAGEVPESTQCPSLTSLNTKDVVRRRHKRRSRQHQRFMARKALLQEQELLSTAPGPGLCLLPSPSQMPA
VTEASDSRRQRPKARSGSNGLCSKKSVPREAPRPGPIKCVAIDCEMVGTGPQGRVSELARCSVVSYSGDV
LYDKYIRPEMPIVDYRTRWSGITRQHMHKAIPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQT
RDTTYVPNLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMELYQLVEVQWEQQVASSA
QAPAEDRGPDSSTDVEQYMDDQYWPEDLTQSTGAETNGGPDRQEGEEGQGARSAPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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