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Report for CCDS39983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39983.1 Public Mus musculus 7 Synm 23 108 98 CCDS HistoryNCBI Gene:233335Re-query CCDS DB by CCDS ID:39983.1Re-query CCDS DB by GeneID:233335See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051389.9 ENSMUSP00000050987.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051389.9Link to Ensembl Protein Viewer:ENSMUSP00000050987.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000051389Re-query CCDS DB by Protein ID:ENSMUSP00000050987
Original member Current member NCBI NM_207663.3 NP_997546.2 Accepted alive Link to Nucleotide Sequence:NM_207663.3Link to Protein Sequence:NP_997546.2Re-query CCDS DB by Nucleotide ID:NM_207663Re-query CCDS DB by Protein ID:NP_997546Link to BLAST:NP_997546.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997546.2 1259 Q70IV5-2 1259 100% 0 0

Chromosomal Locations for CCDS 39983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 67733227 67733553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67734460 67736906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67739105 67739175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67751804 67751928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67758819 67759628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3780 nt):
ATGCTGTCCTGGCGGCTGCAGACGGGCTCTGAAAAGGCGGAGCTGCAGGAGCTCAACGCCCGGCTTTACG
ACTACGTGTGCCGGGTGCGAGAGCTGGAGCGCGAGAACCTGCTACTGGAGGAGGAGTTGCGCAGCCGGCT
GAGCCGGGAGGACCGCTGGGCTGAGGATCAGGCACTCTACGCCGAGGAGGCGCGCAGCCTACGACAGCAG
CTAGATGAACTGAACTGGTCCACAGCCCTGGCCGAGGGCGAGCGCGACGCGCTGCGGAGGGAACTGCTGG
AGCTGCAGCGGGAGGGTGTGGAAGCCGGCACTGCCCGCAGCCGCCTGGATGCCGAGCTGGGAGCGCAACG
GCGGGAGCTAGAGGAGGCTCTGGGCGCGCGCGCCGCCCTCGAGGCGCTGCTGGGCCGGCTGGAAACTGAG
CGCCGCGACTTGGACGCTGCCCACGAACGCCAAGTGCGAGATCTACGAGCCCGCGCTGCCAGCCTCACCA
TGCACTTCCGAGCCCGCGCCACCAGCCCCGCCGCGCCCCCGCCGCGCCTGCGGGACGTGCACGACAGCTA
CGCCCTGCTGGTGGCCGAGTCGTGGAGGGAGAGCGTGCAGCTGTACGAGGACGAGGTGCGCGAGCTGGAG
CAGGCGCTGCGCCGCGGCCAAGAGAGCCGGCTCCAGGCGGAGGACGAGGCGCGGCTGTGCGCGCAGGAGG
CAGACGCGCTGCGGAACCAGGCGCTGGAGTTGGAGCAGCTGCGCGCGAGGCTGGAGGATGAGCTGCTGCG
GATGCGCGAGGAGTACGGGATGCAGGCGGAGGAGCGGCAGAGAGTGATTGACAGCCTGGAGGATGAGAAG
GAAGCCCTTACCTTGGCCATGGCTGACCGGCTGCGGGATTACCAGGAGCTCCTGCAGGTGAAGACTGGAC
TCAGCTTGGAGGTAGCCACCTACAGGGCCTTGTTGGAAGGAGAAAGCAATCCGGAGATATTGATCTGGAC
TGAGAACATTGAAAACGTGCCACAAGAGCCCAGAAACACATCCTATCGCTACACCAACTCAGTATTGCAG
AGGAAAAATGAGAAAAATCTCTTTCCAAGGCGAAAAACACCTTGGGCAGCTGTAAATCACAGCTCGGCCT
CGTATTCTAACTGGCCAGGGCACCTTGACTCACAGACAACCACAGCTGTAGGAAGTGCTGCCAGAAGGGG
TCTCCTGACCTCCCGCCATTCTTCCTCAGCTACAACCTCAGGGCAGCAAAAGCCCCTGGAGAAAACCATC
AGCAGCCGAGCCAATTTAAGACCGGTCACGCCAACCCACGGCTTTCTAAGAAACACTGATGCTCAAATGA
AAACACTCCCCCATAGATCCAAAGTCGAAGGCACGGGGGACACCCACGCACGGCGGGCTACAGAGTCTGT
TATTACCAGAGAGTCATACAGAGGTCACCAGGGCCATGTGGCAGCAGGTGCCGTGAGCAGCACTCCGTCA
AATGAGAGGACTGTCATTCTGGGAAAGAAATTAGAAGCGCAAGCCACTAAAGAACAAGAAAGGGACAGAT
CAGGGGTCATCAGAATAAAGCCAGAAGAGAAAATGTTTGATTCTAAAGAGAAGGCTTCAGAGGAAAGAAA
CTTGAGGTGGGAAGAGCTAACCAAGTTAGATAGAGATGCCAGAAAGAGAGAAAGCCGGCATTTGAGGGAT
GAGGCCAGAGAGAAGGAAGCACTGAAGGAGAGAAGTGTAAAAGAAAGAGAGGTGCCCATCAGTCTAGAAG
TATCCCGGGGCAGCAGAGCAGAGGTGTCCACCATACACTTGCAGTCACCTGGAAGGAAGGACGTTAGCCA
CAGTGGGGGAAGAGAGGCAGAGACCAAAGAGACAAGGTTCCGGCTGGATACCCAGGACACTGCCAGCTCT
CTGCAAAGTGACTCAACGACAGAAACCATAGCCGAAAGCATTGTCACCACCATCCTTAAGCAGTTTACCC
AGTCTCCAGGTGCCGAGGAGGAGGCCACTTCTTTCCCGGACACAAAGGTCACTTATGTGGACAGGAAAGA
GTTTCCTGGTGATGGGAAAACCAAGACAGAAATCGTTGTGGAGTCGAAGCTGACAGATGTTGTTGATGTT
TCTGATGAAGCAGGCCTGGACTACCTTCTAAGCAAGGATGTCAAGGAAGTAGGACTGAAGGGGAAGTCAA
CGGAGACGATGATCGGAGAGATGATCAACCTGGGTCTGAAAGGCAGGGAGGGGAGAGCTAAAGTCGTAAA
TGTGGAGATTGTGGAAGAGCCCATGAGCTACATAGGTGGTGGGAAAATAGACTTTTCTACCCCCTTTCAG
GTAGAAGAAGTCGACGACGTGTCTCCCAGCCCCAAGGGCTTTGTGGAGGAAGAGGATGGTGAAGGAGAGA
CCCACATGGCATTCTCAATGCGTCCACATCAGACCAAACAGCCCCAGGGGACCATCCCTCACGTGGAAGA
AGTGACGGAGGCGGGCGACTCAGAGGGGGAGCAGAGCTATTTTGTGTCTACCCCAGATGAGTACCCCGGG
GGGCATGACAGAGAAGATGATGGCTCAGTGTATGGGCAGATTCATATCGAGGAAGAGTCTACCATCCGGT
ACTCATGGCAAGACGAAATTGCGCAGGGGACCTGGAGAAGGAAAATGAGAGGTGACGTGGGGGGAGAGAA
GCCTGTGAAGGTCCTGGAGGTCCCAGCACTTTCCCTGGGTGGTGCTATTGGTTCTGCTCACTTGAAGGAA
GAAGCCAGTGGTGAACTCCGTGCTGAACCCACAGTCATTGAGAAAGAGATCAAAATACCGCATGAATTCC
ACACCTCCATCAAGGGTGTCTTCTCCAGTGAGCCCCGGCACCAGCTGGTGGAGGTCATCGGGCAGCTGGA
GGAAACATTGCCCGAGCGCATGAAGGAGGAGCTGTCTGCCCTGACCAGACAGAGTCAAGGAGAGTCAGGG
AGCGTTTCTGTGGACGTAAAGAAAGTCCAGAGCGCTGCTGGTGGTTCTGTGACTTTGATGGCTGAGGTCA
ACCTCTCACAGACTGTAGATGCTGATCAGTTGGACCTGGAGCAGTTGAGCAGAGATGAAGCTGGGGAAAT
AGAGAGGGCTGTGGAGTCTGTGGTCAGAGAGAGCTTGGCCAAGCGCTCCAGCCCAGTGCCTAGAAGCCCA
GACAGGGAAGATGGAGAGGAGGTGCCTGCTGGTGGCATTCTCTTCAAGCGCTGGGCCACCAGGGAGCTGT
ATAGCCCATCTGGTGAGAGGGATGATGCTGGCCAGGTCTCTCCCAGCTCAGATCAGCGTGTTACCCAGGG
CCCAGTGTCAGCTACTGTGGAAGTGACCAGCCCAACGGGTTTTGTACAGTCTCATGTGCTGGAGGATGTG
AGCCAGTCTGTAAGGCATGTTAAACTAGGTCCCACTGAAATGTGGAGGACAGAACAGGTGACCTTCGGAG
GACCCACCGCACAGGTGGTGGAGATGGATCTGAGCGACACGAGAGCGATCCGCAGCTGGACCCGAGACAC
AGGGTCGGAAGTGGAAGCTCACGGCGTGTCTCACCGTGGTGGCTGGAGAATTGCACACAGTAGGGATGAG
CGAGTGGCCAGCACTGGCTCTGGGGCCTCCCCTGGGGATGCACACCAGGCCCCTGGAGAGAAAGGCACGG
AGCAGGCTGGATTTGACAAGACGGTACAGTTGCAGAGAATGGTAGACCAAAGGTCGGTGGCCTCAGATGA
GAAGAAAGTGGCTCTTCTTTATCTAGACAATGAAGAGGAGGAGGAGGAGGAGGGCGAAGGGTGGTTTTGA

Translation (1259 aa):
MLSWRLQTGSEKAELQELNARLYDYVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQ
LDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETE
RRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELE
QALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEK
EALTLAMADRLRDYQELLQVKTGLSLEVATYRALLEGESNPEILIWTENIENVPQEPRNTSYRYTNSVLQ
RKNEKNLFPRRKTPWAAVNHSSASYSNWPGHLDSQTTTAVGSAARRGLLTSRHSSSATTSGQQKPLEKTI
SSRANLRPVTPTHGFLRNTDAQMKTLPHRSKVEGTGDTHARRATESVITRESYRGHQGHVAAGAVSSTPS
NERTVILGKKLEAQATKEQERDRSGVIRIKPEEKMFDSKEKASEERNLRWEELTKLDRDARKRESRHLRD
EAREKEALKERSVKEREVPISLEVSRGSRAEVSTIHLQSPGRKDVSHSGGREAETKETRFRLDTQDTASS
LQSDSTTETIAESIVTTILKQFTQSPGAEEEATSFPDTKVTYVDRKEFPGDGKTKTEIVVESKLTDVVDV
SDEAGLDYLLSKDVKEVGLKGKSTETMIGEMINLGLKGREGRAKVVNVEIVEEPMSYIGGGKIDFSTPFQ
VEEVDDVSPSPKGFVEEEDGEGETHMAFSMRPHQTKQPQGTIPHVEEVTEAGDSEGEQSYFVSTPDEYPG
GHDREDDGSVYGQIHIEEESTIRYSWQDEIAQGTWRRKMRGDVGGEKPVKVLEVPALSLGGAIGSAHLKE
EASGELRAEPTVIEKEIKIPHEFHTSIKGVFSSEPRHQLVEVIGQLEETLPERMKEELSALTRQSQGESG
SVSVDVKKVQSAAGGSVTLMAEVNLSQTVDADQLDLEQLSRDEAGEIERAVESVVRESLAKRSSPVPRSP
DREDGEEVPAGGILFKRWATRELYSPSGERDDAGQVSPSSDQRVTQGPVSATVEVTSPTGFVQSHVLEDV
SQSVRHVKLGPTEMWRTEQVTFGGPTAQVVEMDLSDTRAIRSWTRDTGSEVEAHGVSHRGGWRIAHSRDE
RVASTGSGASPGDAHQAPGEKGTEQAGFDKTVQLQRMVDQRSVASDEKKVALLYLDNEEEEEEEGEGWF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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