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Report for CCDS39788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39788.1 Public Mus musculus 7 Dact3 23 108 98 CCDS HistoryNCBI Gene:629378Re-query CCDS DB by CCDS ID:39788.1Re-query CCDS DB by GeneID:629378See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108493.2 ENSMUSP00000104133.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108493.2Link to Ensembl Protein Viewer:ENSMUSP00000104133.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108493Re-query CCDS DB by Protein ID:ENSMUSP00000104133
Original member Current member NCBI NM_001081655.1 NP_001075124.1 Accepted alive Link to Nucleotide Sequence:NM_001081655.1Link to Protein Sequence:NP_001075124.1Re-query CCDS DB by Nucleotide ID:NM_001081655Re-query CCDS DB by Protein ID:NP_001075124Link to BLAST:NP_001075124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075124.1 610 Q0PHV7 610 100% 0 0

Chromosomal Locations for CCDS 39788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16875425 16875673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16883127 16883223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16883358 16883510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16885081 16886414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGATCCGGGCCTTCTCGTTCCCGGTGAGCCCGGAGCGGGGTCGGCTGCGGGGATGGTTGGAAGGCAGCC
TGGCCGGGCTCTGCGAGTTGCATTGGCTCCGAGAGAGGCAGGAGTACCGCGTGCAGCAGGCGCTGCGGCT
GGCCCAGCCCGGGATGGGGGGCGCCGAGGCTGAGGACGAGGAGGACGCCGAGGAGGACGAGGATGCGGCA
GCGGCGCGCAGGGCCGCAGCAGCCCTGGAGGAGCAGCTGGAGGCCCTGCCTGGGCTCATCTGGGACCTGG
GCCAGCAGCTGGGAGACCTGAGTCTGGAGTCTGGTGGCCTGGACCAGGAGAGTGGGCGCAGCTCAGGCTT
CTATGAAGACCCCAGTTCTACTGGAGGCCCAGATTCACCACCCTCCACCTTCTGCGGGGACAGTGGCTTC
TCCGGATCTGGCTCCTATGGACGCCTGGGTCCCTCGGACCCCCGGGGCATCTATGCCAGTGAGAGACCCA
AGTCCTTAGGCGACGCCAGTCCCAGCGCCCCAGAGTCGGTGGGTGCCCGGGTTGCAGTGCCTCGATCCTT
CTCAGCTCCCTATCCGACGGCAGCAGCCGGAGCTGAGACCTGCTCATCCGCGGAACGGCGGGCTCGTGCC
GGGCCCTTCCTGACACCTAGCCCACTGCACGCGGTGGCTCTGCGCAGCCCAAGGCCAAGTGGACGCGTAC
CGTGCGGCTCGCCGGACGGGGCGGCCAGCCGGCCCCTTGACGGCTACATCTCGGCGCTCCTGCGCAGGCG
CCGCCGCCGGGGGGCGGGCCAACCGCGCACAAGTCCCGGGGGCGCGGACGGGGGCGCGCGGCGCCAGAAC
GGCGCGCGCCCGCGGCCGCCTGAAGCGTCCCCGCCCCCCGGAGGCGCGCGACCCGCGCGGGAACCGTCGA
CAGAGCGCGCCTGGGCTGCGGCGTGGGAGGCGGAGGTTCCACCCGAACCCGCGCCTCCGGCCGCCGCGTC
GCCGCCCTCCAGTCCGGCAGAGGGCCGCCTCGTGAAGGCACAGTACATCCCGGGCGCGCCCGCGGCCTCC
AGGGGCCTCCCGGGCCGCGCCGCGCGCCGCCGGGCTCCGCCGCTTACGCGAGGTCGCAGTGTGGAGCAGT
CCCCGCCAAGGGAACGGCCGCGCGCTGCGGGCCGTCGGGGCCGCCTGGCAGAGCCGTCGGGGCGTCGGGG
ATCGCCGAGGGCGCGCAAAGCGGCGCGCTCGCAGTCTGAGACCAGTCTACTGGGCCGCGCGCACGCCGCT
CCGCCACCCAAGTACCCCACGGCCGAGCGAGACGAACCCCGACCGCCCCGGCCCCGTCGTGGCCCAGCGC
CCACGCCGACGGTCCAGGCCTGCCGTCGGTGGCGTTCCACCGCTGAGATCGACGCACCGGATGGCCGCCG
CCCCCGAGCCCGCGTGCCCGCGCCACGAGGCCCCGCACCCTCGCCATCTGCGCCCCCGCGCCGGCTGTTG
TACGGTTGCGCAGGCAGCGACTCCGAGTGCTCAGCGGTAGGGCGGCCGGTGCCGCTCGGCCGTCGGATGC
CGTCTGGATGCGCTCCAGGAGGCTATGGCGAAAGCGAGTCGAGCGCCAGCGAGGGCGAGTCGCCCGCCTT
CAGCTCTGCCTCTAGCGACTCCGACGGCAGCGGAGGCCTCGTGTGGCCGCAGCAACTGGTGGCGGCCGCC
GGGGCCTCGCCGTCGGGGCCCGGGGGTGCTGCTGGTGGAGGGACGCCTGCGGGCCCCGCCAAGGTCTTCG
TGAAGATCAAGGCATCGCACGCGCTGAAGAAAAAGATCCTTCGTTTTCGGTCGGGTTCTCTGAAGGTCAT
GACGACTGTGTGA

Translation (610 aa):
MIRAFSFPVSPERGRLRGWLEGSLAGLCELHWLRERQEYRVQQALRLAQPGMGGAEAEDEEDAEEDEDAA
AARRAAAALEEQLEALPGLIWDLGQQLGDLSLESGGLDQESGRSSGFYEDPSSTGGPDSPPSTFCGDSGF
SGSGSYGRLGPSDPRGIYASERPKSLGDASPSAPESVGARVAVPRSFSAPYPTAAAGAETCSSAERRARA
GPFLTPSPLHAVALRSPRPSGRVPCGSPDGAASRPLDGYISALLRRRRRRGAGQPRTSPGGADGGARRQN
GARPRPPEASPPPGGARPAREPSTERAWAAAWEAEVPPEPAPPAAASPPSSPAEGRLVKAQYIPGAPAAS
RGLPGRAARRRAPPLTRGRSVEQSPPRERPRAAGRRGRLAEPSGRRGSPRARKAARSQSETSLLGRAHAA
PPPKYPTAERDEPRPPRPRRGPAPTPTVQACRRWRSTAEIDAPDGRRPRARVPAPRGPAPSPSAPPRRLL
YGCAGSDSECSAVGRPVPLGRRMPSGCAPGGYGESESSASEGESPAFSSASSDSDGSGGLVWPQQLVAAA
GASPSGPGGAAGGGTPAGPAKVFVKIKASHALKKKILRFRSGSLKVMTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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