NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39783.1 Public Mus musculus 7 Dhx34 23 108 98 CCDS HistoryNCBI Gene:71723Re-query CCDS DB by CCDS ID:39783.1Re-query CCDS DB by GeneID:71723See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094816.2 ENSMUSP00000092410.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094816.2Link to Ensembl Protein Viewer:ENSMUSP00000092410.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000094816Re-query CCDS DB by Protein ID:ENSMUSP00000092410
Original member Current member EBI ENSMUST00000163968.7 ENSMUSP00000126915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163968.7Link to Ensembl Protein Viewer:ENSMUSP00000126915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163968Re-query CCDS DB by Protein ID:ENSMUSP00000126915
Original member Current member NCBI NM_001285931.1 NP_001272860.1 Accepted alive Link to Nucleotide Sequence:NM_001285931.1Link to Protein Sequence:NP_001272860.1Re-query CCDS DB by Nucleotide ID:NM_001285931Re-query CCDS DB by Protein ID:NP_001272860Link to BLAST:NP_001272860.1
Original member Current member NCBI NM_001285932.1 NP_001272861.1 Accepted alive Link to Nucleotide Sequence:NM_001285932.1Link to Protein Sequence:NP_001272861.1Re-query CCDS DB by Nucleotide ID:NM_001285932Re-query CCDS DB by Protein ID:NP_001272861Link to BLAST:NP_001272861.1
Original member Current member NCBI NM_027883.3 NP_082159.3 Accepted alive Link to Nucleotide Sequence:NM_027883.3Link to Protein Sequence:NP_082159.3Re-query CCDS DB by Nucleotide ID:NM_027883Re-query CCDS DB by Protein ID:NP_082159Link to BLAST:NP_082159.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272860.1 1145 Q9DBV3 1145 99.476% 0 6
NP_001272861.1 1145 Q9DBV3 1145 99.476% 0 6
NP_082159.3 1145 Q9DBV3 1145 99.476% 0 6

Chromosomal Locations for CCDS 39783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16197297 16197430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16198566 16198701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16198845 16199021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16199675 16199959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16201930 16202036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16203172 16203289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16203574 16203747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16203867 16204103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16205397 16205498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16205988 16206181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16210514 16210688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16212809 16213026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16214342 16214444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16215224 16215478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16216219 16216530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16217988 16218698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3438 nt):
ATGCCTCCTCCCAGGACAAGGGAGGGGAGGGGTCACCGAGACCGAGACCACCATCGAGCTCCCAGGGAGG
AAGAGGCCCCGGAGAAATGGGACTGGAATTGTCCAGAGACTCGTTGTCTCTTGGAAGATGTATTCTTCCG
CGATGAGGATTATATCCGTCGTGGTTCAGAGGAGTGTCAGAAGTTCTGGGCTTTCTTTGAACGCCTGCAG
AGATTCCAGCACCTCAAGACCTCCCAGAAGAAGGAGAAGGACCCTGGCATGCCCAAACATGGCATCGCTG
CTTTAGCTGACCTACCTCTCACTTACGACCCACGCTACCGCATCAACCTCTCCATTCTCAGCCCAGACAC
TCGGGGTCGTCATGGGCCCGGCAGGGGGCTGCCGCCCGAGAGAGTGTCCGAGTTCCGCCGTGCATTGCTT
CACTACCTAGACTTCCAGCAGAAGCAGGCTTTTGGGAGGCTCGTCAAACTGCAGCGTGAGCGAGCGGCAC
TTCCCATCGCCCAGTATGGGAACCGCATCCTGCAGACTCTCAAGGAACACCAGGTGGTGGTGGTGGCCGG
GGACACAGGCTGTGGCAAGTCTACTCAGGTGCCCCAGTACTTGCTGGCCGCCGGCTTCAGTCACGTGGCA
TGCACTCAGCCCCGGAGAATCGCCTGCATCTCACTGGCCAAGCGCGTTGGCTTCGAGAGCCTCAGTCAGT
ATGGCTCCCAGGTTGGCTACCAGATCCGCTTTGAAAGCACTCGGTCGGCAGCCACCAAGATCGTGTTCCT
GACGGTGGGGCTGCTCCTACGCCAGATCCAGCGTGAGCCCAGCCTGCCCCAGTACCAGGTCCTGATCGTG
GACGAGGTCCACGAGCGACACCTGCACAATGACTTCCTGCTGGGTGTCCTGCAGCGCCTGCTGCCCCAGC
GGCCTGACCTCAAGGTCATCCTCATGTCGGCCACCATCAACATCTCTCTCTTCTCCAGCTACTTCAGCCA
TGCTCCGGTGGTGCAGGTGCCTGGGAGGCTCTTCCCCATCACGGTAGTCTACCAGCCGCAGGAGGCAGAC
CAGACAGCATCCAAGTCAGAGAAGCTGGACCCACGGCCCTTCCTGAGGGTGCTGGAGGCCATCGACAATA
AGTATCCCCCCGAGGAGCGGGGGGACCTTCTTGTCTTCCTCAGTGGCATGGCGGAGATCACCACGGTGCT
GGACGCAGCCCAGGCTTATGCCAGCCTCACCCAGCGCTGGGTGGTGCTGCCGCTGCACAGCGCCCTCTCT
GTGTCTGACCAGGACAAGGTGTTCGATGTGGCTCCAGCTGGAGTCCGGAAGTGCATCCTGTCCACCAACA
TTGCCGAGACCTCAGTCACGATCGATGGCATCCGCTTCGTGGTGGATTCTGGGAAGGTGAAGGAGATGAG
CTACGACCCACAGGCCAAACTGCAGCGGCTGCAGGAATTCTGGATCAGCCAGGCCAGTGCTGAGCAGCGC
AAGGGCCGAGCGGGCCGCACGGGCCCCGGCGTCTGCTACCGTCTCTATGCCGAGTCTGACTATGATGCCT
TTGCGCCGTACCCAGTCCCGGAAATCCGCAGGGTGGCCCTGGATGCACTGGTGCTTCAGATGAAGAGTAT
GAGTGTGGGGGACCCACGCACCTTCCCCTTCATCGAGCCCCCTCCACCTGCCAGCGTGGAAACCGCTATC
CTCTATCTCCAAGAGCAGGGGGCCCTGGACAGCTCGGAGGCCCTCACCCCCATCGGGTCCCTGCTGGCCC
AGCTGCCTGTAGATGTTGTAATTGGGAAGATGCTGATCCTCGGCTCCATGTTCAGCCTGGCAGAGCCTGT
GCTCACCATTGCTGCTGCCCTCAGCGTCCAGTCACCATTCACCCGCAGTGCCCAGAGCAACCTGGACTGT
GCCACTGCCCGGAGACCGCTGGAAAGTGACCAGGGTGACCCCTTCACACTCTTCAATGTCTTCAATGCCT
GGGTGCAGGTGAAGTCTGAGCGGAGCGGAAACTCTCGAAAGTGGTGCCGCCGCCGGGGTGTGGAGGAGCA
CCGGCTGTATGAGATGGCCAACCTGCGGCGCCAGTTCAAGGAGCTGTTGGAGGATCATGGATTGCTGAGT
GGGGCCCAGGTAGTGGCCCCAGGGGACAGCTACAGTCGGCTGCAGCAGCGCCGAGAGCGCAGGGCCCTGC
ACCAGCTGAAGCGACAGCATGAGGAGGGTGGGGGACGCAGGCGCAAGGTGCTGAGGCTGCAGGAGGATGG
CTGCTCCAGCGATGAAGAGGACCGAGAGGGCTCTACCTCCCAGAGGGCTGACAGCGTTGACATCCAGGAT
GTGAAATTCAAGCTTCGGCACAACCTGGAGCAGCTGCAGGCAGCTGCCAGCTCAGCCCAGGACCTGACCC
GAGACCAACTGGCCCTGCTCAAGCTGGTGCTCGGGCGGGGGCTGTACCCACAGCTGGCTGTGCCCGATGC
GTTCAACAGTGGCCGCAAGGACTCAGACCAGATTTTCCACACGCAGGCCAAGCAGGGCACCGTGCTGCAC
CCCACCTGTGTCTTTGCCAACAGCCCTGAGGTATTACACACACAGGGGCAGGAGGCCTCAGGCCAAGAAG
GGAGCCAAGATGGCAGGGACCAAATGAGCTGCAAGCATCAGCTGCTGGCCTTCGTCTCCCTACTGGAGAC
CAACAAGCCATACCTGGTGAACTGCGTCAGAATCCCGGCCCTCCAGTCCCTCCTGCTGTTCAGCCGCTCC
ATTGACACCAACGGTGACTGCTCCCGCCTGGTGGCTGACGGTTGGCTAGAGCTGCAGCTCGCAGATAGCG
AGAGTGCCGTCCGGCTCCTGGCAACATCCCTGCGGCTCCGTGTCCACTGGGAAAGTGCCCTGGACCGGCA
GCTGGCCCGCCAGGCCCAGCGACGGAAGCTAGAGCAGGAGGAAGACATGGGGTCTCCAGCAGTCAGCCCC
CAGGAGGTGGCTGCTCTGAGCAGGGAGCTGCTGCAGTTCATGGTGGCCAAGGTTCCCTACCGCCTCCGAA
GGCTCACTGGTCTAGAAGCCCAGAACCTCTACGTGGGACCCCAGACCATCACGACCGCCCCTAGTCTGCC
CGGCCTCTTTGGAAATTCTACCCTGTCTCCACACCCCACCAAGGGGGGCTACGCTGTCTCTGATTATCTC
ACCTACAACTGCCTCACGAGTGACACTGACCTGTACAGTGACTGTCTGCGTTCCTTCTGGACCTGCCCAC
ACTGTGGCCTGCACATGCCCTTCACACCCTTGGAGCGCATTGCTCATGAGAACACCTGCCCTGAGGCGCC
AGGCGATGATCCAGGGTCTGAGGAGGCTGCTCCTGCACCACCACAGAAGACATCAGCCCTGCAGAGGCCC
TACCACTGCCAGGTGTGCGGGCAGGACTTCCTCTTTACCCCAACTGAGGTACTAAGACATCGAAGGCAGC
ATGTCTGA

Translation (1145 aa):
MPPPRTREGRGHRDRDHHRAPREEEAPEKWDWNCPETRCLLEDVFFRDEDYIRRGSEECQKFWAFFERLQ
RFQHLKTSQKKEKDPGMPKHGIAALADLPLTYDPRYRINLSILSPDTRGRHGPGRGLPPERVSEFRRALL
HYLDFQQKQAFGRLVKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSHVA
CTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYQVLIV
DEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSHAPVVQVPGRLFPITVVYQPQEAD
QTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGMAEITTVLDAAQAYASLTQRWVVLPLHSALS
VSDQDKVFDVAPAGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR
KGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAI
LYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLDC
ATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMANLRRQFKELLEDHGLLS
GAQVVAPGDSYSRLQQRRERRALHQLKRQHEEGGGRRRKVLRLQEDGCSSDEEDREGSTSQRADSVDIQD
VKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLH
PTCVFANSPEVLHTQGQEASGQEGSQDGRDQMSCKHQLLAFVSLLETNKPYLVNCVRIPALQSLLLFSRS
IDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRVHWESALDRQLARQAQRRKLEQEEDMGSPAVSP
QEVAALSRELLQFMVAKVPYRLRRLTGLEAQNLYVGPQTITTAPSLPGLFGNSTLSPHPTKGGYAVSDYL
TYNCLTSDTDLYSDCLRSFWTCPHCGLHMPFTPLERIAHENTCPEAPGDDPGSEEAAPAPPQKTSALQRP
YHCQVCGQDFLFTPTEVLRHRRQHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH